miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2874 3' -55.3 NC_001493.1 + 102300 0.66 0.939984
Target:  5'- gCUCCccCUCGGuGCUCAGGGcCGccuguGCCCg -3'
miRNA:   3'- gGAGGc-GAGUC-UGAGUCUCuGC-----UGGG- -5'
2874 3' -55.3 NC_001493.1 + 102123 0.66 0.939984
Target:  5'- --aUCGgUCGGGCgggCAcAGGCGGCCCu -3'
miRNA:   3'- ggaGGCgAGUCUGa--GUcUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 97097 0.66 0.935182
Target:  5'- cCCggCCGUUaucgaaaaaaCAGAauugCGGGGACGACUCg -3'
miRNA:   3'- -GGa-GGCGA----------GUCUga--GUCUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 52909 0.66 0.935182
Target:  5'- cCCUCgGagUCAGuCUCGaGGACGaACCCc -3'
miRNA:   3'- -GGAGgCg-AGUCuGAGUcUCUGC-UGGG- -5'
2874 3' -55.3 NC_001493.1 + 15433 0.66 0.930143
Target:  5'- gUUCCGgaCGGGgaguucugcUUCGGGGACGGCgCCu -3'
miRNA:   3'- gGAGGCgaGUCU---------GAGUCUCUGCUG-GG- -5'
2874 3' -55.3 NC_001493.1 + 54554 0.66 0.930143
Target:  5'- aUCUgUGCUUGuGGCUguGAGGCGAUCg -3'
miRNA:   3'- -GGAgGCGAGU-CUGAguCUCUGCUGGg -5'
2874 3' -55.3 NC_001493.1 + 130987 0.66 0.930143
Target:  5'- gUUCCGgaCGGGgaguucugcUUCGGGGACGGCgCCu -3'
miRNA:   3'- gGAGGCgaGUCU---------GAGUCUCUGCUG-GG- -5'
2874 3' -55.3 NC_001493.1 + 28243 0.66 0.927006
Target:  5'- -gUCUGCUCGcggaguacgagagacGACUgGGuAGACGGCCg -3'
miRNA:   3'- ggAGGCGAGU---------------CUGAgUC-UCUGCUGGg -5'
2874 3' -55.3 NC_001493.1 + 21401 0.66 0.924866
Target:  5'- uUCUCCcgucaucaCUCGGuCUCcGAGGCGuCCCg -3'
miRNA:   3'- -GGAGGc-------GAGUCuGAGuCUCUGCuGGG- -5'
2874 3' -55.3 NC_001493.1 + 64400 0.66 0.924326
Target:  5'- aCCga-GCUCAucacgacaacgguGGCUCGGAuGAgGACCCc -3'
miRNA:   3'- -GGaggCGAGU-------------CUGAGUCU-CUgCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 132494 0.66 0.919352
Target:  5'- --gCC-CUCGGGgUCAcaucGAGAUGGCCCa -3'
miRNA:   3'- ggaGGcGAGUCUgAGU----CUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 16940 0.66 0.919352
Target:  5'- --gCC-CUCGGGgUCAcaucGAGAUGGCCCa -3'
miRNA:   3'- ggaGGcGAGUCUgAGU----CUCUGCUGGG- -5'
2874 3' -55.3 NC_001493.1 + 124885 0.66 0.913601
Target:  5'- uCCUCCGCggaGGACgUGGAGcgcguggacGCGuCCCg -3'
miRNA:   3'- -GGAGGCGag-UCUGaGUCUC---------UGCuGGG- -5'
2874 3' -55.3 NC_001493.1 + 90824 0.66 0.913601
Target:  5'- -gUCUGCUCGaacggccucucGACUCGGAGccgGCGGgCCu -3'
miRNA:   3'- ggAGGCGAGU-----------CUGAGUCUC---UGCUgGG- -5'
2874 3' -55.3 NC_001493.1 + 9331 0.66 0.913601
Target:  5'- uCCUCCGCggaGGACgUGGAGcgcguggacGCGuCCCg -3'
miRNA:   3'- -GGAGGCGag-UCUGaGUCUC---------UGCuGGG- -5'
2874 3' -55.3 NC_001493.1 + 10005 0.66 0.913013
Target:  5'- gCCUCCGCguagcucgguggcUgGGACgauauggugagCAGGGAUGcGCCCg -3'
miRNA:   3'- -GGAGGCG-------------AgUCUGa----------GUCUCUGC-UGGG- -5'
2874 3' -55.3 NC_001493.1 + 125559 0.66 0.913013
Target:  5'- gCCUCCGCguagcucgguggcUgGGACgauauggugagCAGGGAUGcGCCCg -3'
miRNA:   3'- -GGAGGCG-------------AgUCUGa----------GUCUCUGC-UGGG- -5'
2874 3' -55.3 NC_001493.1 + 53863 0.67 0.907613
Target:  5'- gCUuuGCUCGGuuucuaGCUCGGgagcccGGGCGAgCCa -3'
miRNA:   3'- gGAggCGAGUC------UGAGUC------UCUGCUgGG- -5'
2874 3' -55.3 NC_001493.1 + 20556 0.67 0.888258
Target:  5'- aCCUggcaGCUCGGGCUCAucaugcucGAGACGAUa- -3'
miRNA:   3'- -GGAgg--CGAGUCUGAGU--------CUCUGCUGgg -5'
2874 3' -55.3 NC_001493.1 + 33434 0.67 0.888258
Target:  5'- gCUCuCGUUCGGug-CGGGGACGGUCCg -3'
miRNA:   3'- gGAG-GCGAGUCugaGUCUCUGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.