miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 5' -53.6 NC_006146.1 + 118247 0.66 0.970962
Target:  5'- gGGGCGAGGcUGGaCGCCCucaugCGCCa- -3'
miRNA:   3'- -UCUGUUUU-ACC-GCGGGucua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 54018 0.66 0.970962
Target:  5'- cGGCAccAGGUGGCGCCUccGGAgggCgGCCa- -3'
miRNA:   3'- uCUGU--UUUACCGCGGG--UCUa--G-CGGag -5'
28742 5' -53.6 NC_006146.1 + 128180 0.66 0.970962
Target:  5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3'
miRNA:   3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5'
28742 5' -53.6 NC_006146.1 + 120598 0.66 0.970962
Target:  5'- uGGACAAGGcccggcGGCGCCugaCAGAUCuCCUg -3'
miRNA:   3'- -UCUGUUUUa-----CCGCGG---GUCUAGcGGAg -5'
28742 5' -53.6 NC_006146.1 + 6013 0.66 0.970962
Target:  5'- gAGGCAAcgaGG-GCCCAGAUCcUCUCc -3'
miRNA:   3'- -UCUGUUuuaCCgCGGGUCUAGcGGAG- -5'
28742 5' -53.6 NC_006146.1 + 56583 0.66 0.96794
Target:  5'- gGGGCGGccgGGCGCCgAGccCGCCg- -3'
miRNA:   3'- -UCUGUUuuaCCGCGGgUCuaGCGGag -5'
28742 5' -53.6 NC_006146.1 + 85918 0.66 0.96794
Target:  5'- gGGGCuuuacccUGGgGCCUGGAUgGCCUg -3'
miRNA:   3'- -UCUGuuuu---ACCgCGGGUCUAgCGGAg -5'
28742 5' -53.6 NC_006146.1 + 89848 0.66 0.967939
Target:  5'- -aACAcuuuGUGGCGCguCCucGAUUGCCUCa -3'
miRNA:   3'- ucUGUuu--UACCGCG--GGu-CUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 43372 0.66 0.967939
Target:  5'- gAGACGGAGuUGGUgaaGUUCAGGUUGCCccUCa -3'
miRNA:   3'- -UCUGUUUU-ACCG---CGGGUCUAGCGG--AG- -5'
28742 5' -53.6 NC_006146.1 + 42384 0.66 0.967939
Target:  5'- uGGGCGAGG-GGCGcCCCAGGgccaccccgaCGCCg- -3'
miRNA:   3'- -UCUGUUUUaCCGC-GGGUCUa---------GCGGag -5'
28742 5' -53.6 NC_006146.1 + 96830 0.66 0.967626
Target:  5'- gGGACGGGcgGGCagguuggGCCCGcuUCaGCCUCu -3'
miRNA:   3'- -UCUGUUUuaCCG-------CGGGUcuAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 97333 0.66 0.967309
Target:  5'- aGGAgAGGAUGGCGUCCGGccacaaccaccCGCC-Cg -3'
miRNA:   3'- -UCUgUUUUACCGCGGGUCua---------GCGGaG- -5'
28742 5' -53.6 NC_006146.1 + 161762 0.66 0.966022
Target:  5'- gAGGucCGAGggGGCGCCUGGGcgggggccugaaucuUCGCCUg -3'
miRNA:   3'- -UCU--GUUUuaCCGCGGGUCU---------------AGCGGAg -5'
28742 5' -53.6 NC_006146.1 + 40365 0.66 0.9647
Target:  5'- cGGCGGAGaaGGCcCCCuGGUCGCCg- -3'
miRNA:   3'- uCUGUUUUa-CCGcGGGuCUAGCGGag -5'
28742 5' -53.6 NC_006146.1 + 160179 0.66 0.9647
Target:  5'- uGGCuc--UGGCuGCCCAGAuuauccUCGCCa- -3'
miRNA:   3'- uCUGuuuuACCG-CGGGUCU------AGCGGag -5'
28742 5' -53.6 NC_006146.1 + 101894 0.66 0.9647
Target:  5'- uGGgAAAA-GGCGCCCAGGUCuggaGCUg- -3'
miRNA:   3'- uCUgUUUUaCCGCGGGUCUAG----CGGag -5'
28742 5' -53.6 NC_006146.1 + 170638 0.66 0.9647
Target:  5'- cGGGCucccccucacGGGUGGCGCgCAGAUCGgCg- -3'
miRNA:   3'- -UCUGu---------UUUACCGCGgGUCUAGCgGag -5'
28742 5' -53.6 NC_006146.1 + 134279 0.66 0.964364
Target:  5'- uGGCAGAAUuuaaaagugGGgGCCCGGGUCauugguuucuaaaGCUUCa -3'
miRNA:   3'- uCUGUUUUA---------CCgCGGGUCUAG-------------CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 143642 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28742 5' -53.6 NC_006146.1 + 149797 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.