miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 5' -53.6 NC_006146.1 + 73950 0.74 0.637732
Target:  5'- cGACAcccUGGCGCCCAGAcUCGCg-- -3'
miRNA:   3'- uCUGUuuuACCGCGGGUCU-AGCGgag -5'
28742 5' -53.6 NC_006146.1 + 85918 0.66 0.96794
Target:  5'- gGGGCuuuacccUGGgGCCUGGAUgGCCUg -3'
miRNA:   3'- -UCUGuuuu---ACCgCGGGUCUAgCGGAg -5'
28742 5' -53.6 NC_006146.1 + 86521 0.71 0.806969
Target:  5'- gAGGCcauGAUGGcCGCCCGGuccaCGCCUa -3'
miRNA:   3'- -UCUGuu-UUACC-GCGGGUCua--GCGGAg -5'
28742 5' -53.6 NC_006146.1 + 88259 0.68 0.913471
Target:  5'- cAGGCAAAAUccGGCGUgugCUGGGUCggGCCUCu -3'
miRNA:   3'- -UCUGUUUUA--CCGCG---GGUCUAG--CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 89683 0.67 0.945062
Target:  5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3'
miRNA:   3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5'
28742 5' -53.6 NC_006146.1 + 89848 0.66 0.967939
Target:  5'- -aACAcuuuGUGGCGCguCCucGAUUGCCUCa -3'
miRNA:   3'- ucUGUuu--UACCGCG--GGu-CUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 92444 0.69 0.880392
Target:  5'- gAGACuguAGcGGCGCCgGGAUgGCCa- -3'
miRNA:   3'- -UCUGuu-UUaCCGCGGgUCUAgCGGag -5'
28742 5' -53.6 NC_006146.1 + 95612 0.68 0.924994
Target:  5'- uGGACGAGA--GCGuCCCGGA-CGCuCUCg -3'
miRNA:   3'- -UCUGUUUUacCGC-GGGUCUaGCG-GAG- -5'
28742 5' -53.6 NC_006146.1 + 96830 0.66 0.967626
Target:  5'- gGGACGGGcgGGCagguuggGCCCGcuUCaGCCUCu -3'
miRNA:   3'- -UCUGUUUuaCCG-------CGGGUcuAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 97333 0.66 0.967309
Target:  5'- aGGAgAGGAUGGCGUCCGGccacaaccaccCGCC-Cg -3'
miRNA:   3'- -UCUgUUUUACCGCGGGUCua---------GCGGaG- -5'
28742 5' -53.6 NC_006146.1 + 99817 0.67 0.945062
Target:  5'- cGGCGAGggGGUGUUCGGG--GCCUCg -3'
miRNA:   3'- uCUGUUUuaCCGCGGGUCUagCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 101894 0.66 0.9647
Target:  5'- uGGgAAAA-GGCGCCCAGGUCuggaGCUg- -3'
miRNA:   3'- uCUgUUUUaCCGCGGGUCUAG----CGGag -5'
28742 5' -53.6 NC_006146.1 + 105700 0.67 0.949463
Target:  5'- cGGGCucccagGGCcCCCAGAgCGCCUa -3'
miRNA:   3'- -UCUGuuuua-CCGcGGGUCUaGCGGAg -5'
28742 5' -53.6 NC_006146.1 + 110843 0.72 0.720331
Target:  5'- gGGACGAGGcGGCGCCCgaucAGAgggacgcugCGUCUCg -3'
miRNA:   3'- -UCUGUUUUaCCGCGGG----UCUa--------GCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 110924 0.68 0.924994
Target:  5'- aGGACAGcAUGGUcucguGCCCcugcuuUCGCCUCc -3'
miRNA:   3'- -UCUGUUuUACCG-----CGGGucu---AGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 112114 0.74 0.606434
Target:  5'- gGGugGAGGUGGUGCUgGuGGUgGCCUCg -3'
miRNA:   3'- -UCugUUUUACCGCGGgU-CUAgCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 112216 0.7 0.824648
Target:  5'- uGGACAGGGUGGCgGCCUGGGUgGUUg- -3'
miRNA:   3'- -UCUGUUUUACCG-CGGGUCUAgCGGag -5'
28742 5' -53.6 NC_006146.1 + 113668 0.68 0.900961
Target:  5'- cGACGAGagGUGGCucggGCCCGGGcccgGCCUCc -3'
miRNA:   3'- uCUGUUU--UACCG----CGGGUCUag--CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 116293 0.69 0.887484
Target:  5'- gAGGCGgccGGAUGGCGCCCccgcGGUCcUCUCc -3'
miRNA:   3'- -UCUGU---UUUACCGCGGGu---CUAGcGGAG- -5'
28742 5' -53.6 NC_006146.1 + 118247 0.66 0.970962
Target:  5'- gGGGCGAGGcUGGaCGCCCucaugCGCCa- -3'
miRNA:   3'- -UCUGUUUU-ACC-GCGGGucua-GCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.