miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 5' -53.6 NC_006146.1 + 34294 0.67 0.949464
Target:  5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3'
miRNA:   3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 40365 0.66 0.9647
Target:  5'- cGGCGGAGaaGGCcCCCuGGUCGCCg- -3'
miRNA:   3'- uCUGUUUUa-CCGcGGGuCUAGCGGag -5'
28742 5' -53.6 NC_006146.1 + 42384 0.66 0.967939
Target:  5'- uGGGCGAGG-GGCGcCCCAGGgccaccccgaCGCCg- -3'
miRNA:   3'- -UCUGUUUUaCCGC-GGGUCUa---------GCGGag -5'
28742 5' -53.6 NC_006146.1 + 42709 0.67 0.935523
Target:  5'- cGGCGccgcGGCGCCCcccuGGGcCGCCUCc -3'
miRNA:   3'- uCUGUuuuaCCGCGGG----UCUaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 43372 0.66 0.967939
Target:  5'- gAGACGGAGuUGGUgaaGUUCAGGUUGCCccUCa -3'
miRNA:   3'- -UCUGUUUU-ACCG---CGGGUCUAGCGG--AG- -5'
28742 5' -53.6 NC_006146.1 + 43941 0.68 0.919356
Target:  5'- cGGGCGGGGUcuauccagacGCGCCCGGAgagCGCCa- -3'
miRNA:   3'- -UCUGUUUUAc---------CGCGGGUCUa--GCGGag -5'
28742 5' -53.6 NC_006146.1 + 47714 0.67 0.945062
Target:  5'- aGGugGGGAgcaGCGCCCGGAgcUCGUCg- -3'
miRNA:   3'- -UCugUUUUac-CGCGGGUCU--AGCGGag -5'
28742 5' -53.6 NC_006146.1 + 48640 0.68 0.913471
Target:  5'- cGGGCuccGGGcgGGUGCCCAG--CGCCUUc -3'
miRNA:   3'- -UCUG---UUUuaCCGCGGGUCuaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 49547 0.69 0.857759
Target:  5'- gGGGCGGAGgccacgccGGCcagGCCCAGcAUgGCCUCg -3'
miRNA:   3'- -UCUGUUUUa-------CCG---CGGGUC-UAgCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 54018 0.66 0.970962
Target:  5'- cGGCAccAGGUGGCGCCUccGGAgggCgGCCa- -3'
miRNA:   3'- uCUGU--UUUACCGCGGG--UCUa--G-CGGag -5'
28742 5' -53.6 NC_006146.1 + 54248 0.78 0.419496
Target:  5'- uGGACGAGAUGGcCGCCCAGuuuGUgGCCa- -3'
miRNA:   3'- -UCUGUUUUACC-GCGGGUC---UAgCGGag -5'
28742 5' -53.6 NC_006146.1 + 56583 0.66 0.96794
Target:  5'- gGGGCGGccgGGCGCCgAGccCGCCg- -3'
miRNA:   3'- -UCUGUUuuaCCGCGGgUCuaGCGGag -5'
28742 5' -53.6 NC_006146.1 + 57996 0.72 0.720331
Target:  5'- aGGACGAGcUGGagGCCCGGGUCucgGCCUUc -3'
miRNA:   3'- -UCUGUUUuACCg-CGGGUCUAG---CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 64366 0.69 0.887484
Target:  5'- uGGAguGGAUGGUGCCCaccaggGGAUgCGCC-Ca -3'
miRNA:   3'- -UCUguUUUACCGCGGG------UCUA-GCGGaG- -5'
28742 5' -53.6 NC_006146.1 + 65211 0.67 0.929855
Target:  5'- gGGGCccuGGGAgcccgGGCGUCCAGAggugaccUCGCUUCc -3'
miRNA:   3'- -UCUG---UUUUa----CCGCGGGUCU-------AGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 67788 0.68 0.900961
Target:  5'- gGGACGuGAcGGCGgCCAGGcucugcccCGCCUCg -3'
miRNA:   3'- -UCUGUuUUaCCGCgGGUCUa-------GCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 68331 0.69 0.887484
Target:  5'- cGAgAGGAUGGCGUCgAGGaCGgCCUCc -3'
miRNA:   3'- uCUgUUUUACCGCGGgUCUaGC-GGAG- -5'
28742 5' -53.6 NC_006146.1 + 68739 0.71 0.797877
Target:  5'- -cGCGGGGUGGUggagGCCCAGGUgGCCa- -3'
miRNA:   3'- ucUGUUUUACCG----CGGGUCUAgCGGag -5'
28742 5' -53.6 NC_006146.1 + 68925 0.66 0.957548
Target:  5'- uGGACGAGAccggGGCcuggGCCCAGGagaucuccgccgUUGUCUCa -3'
miRNA:   3'- -UCUGUUUUa---CCG----CGGGUCU------------AGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 70533 0.66 0.957548
Target:  5'- aGGACA---UGGCuGCCCGGcuggcUCGUCUUg -3'
miRNA:   3'- -UCUGUuuuACCG-CGGGUCu----AGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.