miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 5' -53.6 NC_006146.1 + 147179 0.67 0.949464
Target:  5'- -cGCAGAccGGCGCCCcu-UCGCC-Cg -3'
miRNA:   3'- ucUGUUUuaCCGCGGGucuAGCGGaG- -5'
28742 5' -53.6 NC_006146.1 + 147153 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 146770 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28742 5' -53.6 NC_006146.1 + 146719 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28742 5' -53.6 NC_006146.1 + 145823 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28742 5' -53.6 NC_006146.1 + 144075 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 143693 0.67 0.949034
Target:  5'- gGGACAGAGuuagaaguuagccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU-------------ACCgCGG-GUCUagCGGAg -5'
28742 5' -53.6 NC_006146.1 + 143642 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28742 5' -53.6 NC_006146.1 + 142745 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28742 5' -53.6 NC_006146.1 + 140758 0.72 0.75027
Target:  5'- uGAUAGAAUGGCuaCUAGGUUGCCc- -3'
miRNA:   3'- uCUGUUUUACCGcgGGUCUAGCGGag -5'
28742 5' -53.6 NC_006146.1 + 138124 0.67 0.949464
Target:  5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3'
miRNA:   3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 134279 0.66 0.964364
Target:  5'- uGGCAGAAUuuaaaagugGGgGCCCGGGUCauugguuucuaaaGCUUCa -3'
miRNA:   3'- uCUGUUUUA---------CCgCGGGUCUAG-------------CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 133833 0.77 0.475239
Target:  5'- gGGugAGGAUGGUggGCCCAGAcgcaGCCUCu -3'
miRNA:   3'- -UCugUUUUACCG--CGGGUCUag--CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 130968 0.68 0.900961
Target:  5'- gGGuCAGGA-GGCGCCCAGAUa-CUUCc -3'
miRNA:   3'- -UCuGUUUUaCCGCGGGUCUAgcGGAG- -5'
28742 5' -53.6 NC_006146.1 + 129117 0.7 0.824648
Target:  5'- aGGGCcugaGAGcgGGCGCCCGGGcgcaggGCCUCc -3'
miRNA:   3'- -UCUG----UUUuaCCGCGGGUCUag----CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 128180 0.66 0.970962
Target:  5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3'
miRNA:   3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5'
28742 5' -53.6 NC_006146.1 + 128113 0.69 0.87307
Target:  5'- gGGACA--AUGGCGUCCAGGaggCGCg-- -3'
miRNA:   3'- -UCUGUuuUACCGCGGGUCUa--GCGgag -5'
28742 5' -53.6 NC_006146.1 + 126941 0.73 0.658588
Target:  5'- uGGCAGGAUGGCGCucuCCGGG-CGCgUCu -3'
miRNA:   3'- uCUGUUUUACCGCG---GGUCUaGCGgAG- -5'
28742 5' -53.6 NC_006146.1 + 126248 0.69 0.857759
Target:  5'- gGGACcca--GGCGCCCGGGcuugggagaCGCCUCu -3'
miRNA:   3'- -UCUGuuuuaCCGCGGGUCUa--------GCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 124329 0.69 0.872326
Target:  5'- uGACGcuGcUGGCGCacgccacCCuGAUCGCCUCc -3'
miRNA:   3'- uCUGUuuU-ACCGCG-------GGuCUAGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.