miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 5' -53.6 NC_006146.1 + 110924 0.68 0.924994
Target:  5'- aGGACAGcAUGGUcucguGCCCcugcuuUCGCCUCc -3'
miRNA:   3'- -UCUGUUuUACCG-----CGGGucu---AGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 130968 0.68 0.900961
Target:  5'- gGGuCAGGA-GGCGCCCAGAUa-CUUCc -3'
miRNA:   3'- -UCuGUUUUaCCGCGGGUCUAgcGGAG- -5'
28742 5' -53.6 NC_006146.1 + 167512 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 126941 0.73 0.658588
Target:  5'- uGGCAGGAUGGCGCucuCCGGG-CGCgUCu -3'
miRNA:   3'- uCUGUUUUACCGCG---GGUCUaGCGgAG- -5'
28742 5' -53.6 NC_006146.1 + 34294 0.67 0.949464
Target:  5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3'
miRNA:   3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 18444 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 67788 0.68 0.900961
Target:  5'- gGGACGuGAcGGCGgCCAGGcucugcccCGCCUCg -3'
miRNA:   3'- -UCUGUuUUaCCGCgGGUCUa-------GCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 4790 0.74 0.637732
Target:  5'- cAGuACGAGuuucuGCGCCCGGggCGCCUCa -3'
miRNA:   3'- -UC-UGUUUuac--CGCGGGUCuaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 15366 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 112114 0.74 0.606434
Target:  5'- gGGugGAGGUGGUGCUgGuGGUgGCCUCg -3'
miRNA:   3'- -UCugUUUUACCGCGGgU-CUAgCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 113668 0.68 0.900961
Target:  5'- cGACGAGagGUGGCucggGCCCGGGcccgGCCUCc -3'
miRNA:   3'- uCUGUUU--UACCG----CGGGUCUag--CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 95612 0.68 0.924994
Target:  5'- uGGACGAGA--GCGuCCCGGA-CGCuCUCg -3'
miRNA:   3'- -UCUGUUUUacCGC-GGGUCUaGCG-GAG- -5'
28742 5' -53.6 NC_006146.1 + 49547 0.69 0.857759
Target:  5'- gGGGCGGAGgccacgccGGCcagGCCCAGcAUgGCCUCg -3'
miRNA:   3'- -UCUGUUUUa-------CCG---CGGGUC-UAgCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 168444 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 86521 0.71 0.806969
Target:  5'- gAGGCcauGAUGGcCGCCCGGuccaCGCCUa -3'
miRNA:   3'- -UCUGuu-UUACC-GCGGGUCua--GCGGAg -5'
28742 5' -53.6 NC_006146.1 + 135 0.73 0.689684
Target:  5'- aGGACu--AUGGCGCCUGGAUgGCUg- -3'
miRNA:   3'- -UCUGuuuUACCGCGGGUCUAgCGGag -5'
28742 5' -53.6 NC_006146.1 + 19428 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 138124 0.67 0.949464
Target:  5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3'
miRNA:   3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 89683 0.67 0.945062
Target:  5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3'
miRNA:   3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5'
28742 5' -53.6 NC_006146.1 + 21522 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.