miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 5' -53.6 NC_006146.1 + 49547 0.69 0.857759
Target:  5'- gGGGCGGAGgccacgccGGCcagGCCCAGcAUgGCCUCg -3'
miRNA:   3'- -UCUGUUUUa-------CCG---CGGGUC-UAgCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 70533 0.66 0.957548
Target:  5'- aGGACA---UGGCuGCCCGGcuggcUCGUCUUg -3'
miRNA:   3'- -UCUGUuuuACCG-CGGGUCu----AGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 170307 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 130968 0.68 0.900961
Target:  5'- gGGuCAGGA-GGCGCCCAGAUa-CUUCc -3'
miRNA:   3'- -UCuGUUUUaCCGCGGGUCUAgcGGAG- -5'
28742 5' -53.6 NC_006146.1 + 95612 0.68 0.924994
Target:  5'- uGGACGAGA--GCGuCCCGGA-CGCuCUCg -3'
miRNA:   3'- -UCUGUUUUacCGC-GGGUCUaGCG-GAG- -5'
28742 5' -53.6 NC_006146.1 + 54018 0.66 0.970962
Target:  5'- cGGCAccAGGUGGCGCCUccGGAgggCgGCCa- -3'
miRNA:   3'- uCUGU--UUUACCGCGGG--UCUa--G-CGGag -5'
28742 5' -53.6 NC_006146.1 + 170638 0.66 0.9647
Target:  5'- cGGGCucccccucacGGGUGGCGCgCAGAUCGgCg- -3'
miRNA:   3'- -UCUGu---------UUUACCGCGgGUCUAGCgGag -5'
28742 5' -53.6 NC_006146.1 + 128180 0.66 0.970962
Target:  5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3'
miRNA:   3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5'
28742 5' -53.6 NC_006146.1 + 28662 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 19428 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28742 5' -53.6 NC_006146.1 + 34294 0.67 0.949464
Target:  5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3'
miRNA:   3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 89683 0.67 0.945062
Target:  5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3'
miRNA:   3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5'
28742 5' -53.6 NC_006146.1 + 15366 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 56583 0.66 0.96794
Target:  5'- gGGGCGGccgGGCGCCgAGccCGCCg- -3'
miRNA:   3'- -UCUGUUuuaCCGCGGgUCuaGCGGag -5'
28742 5' -53.6 NC_006146.1 + 155057 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28742 5' -53.6 NC_006146.1 + 151979 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28742 5' -53.6 NC_006146.1 + 161762 0.66 0.966022
Target:  5'- gAGGucCGAGggGGCGCCUGGGcgggggccugaaucuUCGCCUg -3'
miRNA:   3'- -UCU--GUUUuaCCGCGGGUCU---------------AGCGGAg -5'
28742 5' -53.6 NC_006146.1 + 145823 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28742 5' -53.6 NC_006146.1 + 143642 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28742 5' -53.6 NC_006146.1 + 120760 0.66 0.956396
Target:  5'- cGACGAGcgcuggcGGCGCCUcaugucccuggcggAGGUCGCCg- -3'
miRNA:   3'- uCUGUUUua-----CCGCGGG--------------UCUAGCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.