miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28742 5' -53.6 NC_006146.1 + 170638 0.66 0.9647
Target:  5'- cGGGCucccccucacGGGUGGCGCgCAGAUCGgCg- -3'
miRNA:   3'- -UCUGu---------UUUACCGCGgGUCUAGCgGag -5'
28742 5' -53.6 NC_006146.1 + 170307 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 169376 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 168444 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 167512 0.7 0.824648
Target:  5'- gGGGCAGGGcUGGCGCCgGGccgCGCCc- -3'
miRNA:   3'- -UCUGUUUU-ACCGCGGgUCua-GCGGag -5'
28742 5' -53.6 NC_006146.1 + 161762 0.66 0.966022
Target:  5'- gAGGucCGAGggGGCGCCUGGGcgggggccugaaucuUCGCCUg -3'
miRNA:   3'- -UCU--GUUUuaCCGCGGGUCU---------------AGCGGAg -5'
28742 5' -53.6 NC_006146.1 + 160179 0.66 0.9647
Target:  5'- uGGCuc--UGGCuGCCCAGAuuauccUCGCCa- -3'
miRNA:   3'- uCUGuuuuACCG-CGGGUCU------AGCGGag -5'
28742 5' -53.6 NC_006146.1 + 158136 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28742 5' -53.6 NC_006146.1 + 156387 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 156004 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28742 5' -53.6 NC_006146.1 + 155953 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28742 5' -53.6 NC_006146.1 + 155057 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28742 5' -53.6 NC_006146.1 + 153309 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 152926 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28742 5' -53.6 NC_006146.1 + 152875 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28742 5' -53.6 NC_006146.1 + 151979 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5'
28742 5' -53.6 NC_006146.1 + 150231 1.11 0.003678
Target:  5'- gAGACAAAAUGGCGCCCAGAUCGCCUCa -3'
miRNA:   3'- -UCUGUUUUACCGCGGGUCUAGCGGAG- -5'
28742 5' -53.6 NC_006146.1 + 149848 0.66 0.952401
Target:  5'- gGGACAGAGuuagaaguuaggccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU--------------ACCgCGG-GUCUagCGGAg -5'
28742 5' -53.6 NC_006146.1 + 149797 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28742 5' -53.6 NC_006146.1 + 148901 0.69 0.894342
Target:  5'- gGGACcuGGUGGCGCCCGc--CGgCUCc -3'
miRNA:   3'- -UCUGuuUUACCGCGGGUcuaGCgGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.