miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 3' -56.9 NC_006146.1 + 169173 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 168241 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 167309 0.66 0.847147
Target:  5'- -cGGCGCCUGCagggGGGGCcGGCgggGCg -3'
miRNA:   3'- ucCCGUGGAUGag--CUCCGuCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 162649 0.66 0.862727
Target:  5'- gGGGGUgcauGCCccCUCGuAGGCAGuGCUUcACg -3'
miRNA:   3'- -UCCCG----UGGauGAGC-UCCGUC-CGAA-UG- -5'
28744 3' -56.9 NC_006146.1 + 157001 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 156734 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 153923 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 153657 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 151710 0.68 0.786859
Target:  5'- gAGGcGCGCCUGCguaGAaGUAGGCcUGCu -3'
miRNA:   3'- -UCC-CGUGGAUGag-CUcCGUCCGaAUG- -5'
28744 3' -56.9 NC_006146.1 + 150845 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 150579 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 147767 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 147501 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 144690 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCgagacuGGGCggcUGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCG------UCCGa--AUG- -5'
28744 3' -56.9 NC_006146.1 + 144423 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 141612 0.66 0.884525
Target:  5'- cGGGCGCCcuugcCUgGAGGCAGaGaCUggGCg -3'
miRNA:   3'- uCCCGUGGau---GAgCUCCGUC-C-GAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 141345 1.1 0.001887
Target:  5'- gAGGGCACCUACUCGAGGCAGGCUUACa -3'
miRNA:   3'- -UCCCGUGGAUGAGCUCCGUCCGAAUG- -5'
28744 3' -56.9 NC_006146.1 + 139168 0.72 0.567429
Target:  5'- gGGGGCGCCUG--UGAGGC-GGCUg-- -3'
miRNA:   3'- -UCCCGUGGAUgaGCUCCGuCCGAaug -5'
28744 3' -56.9 NC_006146.1 + 137828 0.74 0.441214
Target:  5'- cGGuGCACCUggaaggcagggggGCUCGGGGUGGGUggGCg -3'
miRNA:   3'- uCC-CGUGGA-------------UGAGCUCCGUCCGaaUG- -5'
28744 3' -56.9 NC_006146.1 + 123707 0.7 0.638774
Target:  5'- cAGGG-GCCUggcGCUCGGGGCGgcGGCggGCu -3'
miRNA:   3'- -UCCCgUGGA---UGAGCUCCGU--CCGaaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.