miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 3' -56.9 NC_006146.1 + 122146 0.67 0.82233
Target:  5'- -cGGCGgCUGCUgGAGGCcGGGCg--- -3'
miRNA:   3'- ucCCGUgGAUGAgCUCCG-UCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 115577 0.68 0.786859
Target:  5'- -cGGC-CCUACUCGAGaGCcugucAGGCUUcGCc -3'
miRNA:   3'- ucCCGuGGAUGAGCUC-CG-----UCCGAA-UG- -5'
28744 3' -56.9 NC_006146.1 + 114606 0.67 0.830785
Target:  5'- uGGGcCACC---UCGAGGCGGcGCUggACg -3'
miRNA:   3'- uCCC-GUGGaugAGCUCCGUC-CGAa-UG- -5'
28744 3' -56.9 NC_006146.1 + 111342 0.67 0.83906
Target:  5'- uGGGCGCa-ACcCGAGGUGGGCa--- -3'
miRNA:   3'- uCCCGUGgaUGaGCUCCGUCCGaaug -5'
28744 3' -56.9 NC_006146.1 + 110865 0.7 0.649007
Target:  5'- gAGGGaCGCUgcgucucggGCUCGGGcGCAGGCggggACg -3'
miRNA:   3'- -UCCC-GUGGa--------UGAGCUC-CGUCCGaa--UG- -5'
28744 3' -56.9 NC_006146.1 + 103392 0.71 0.618301
Target:  5'- uAGGGCGCCUGC-CaGuGGgGGGCgucgUGCu -3'
miRNA:   3'- -UCCCGUGGAUGaG-CuCCgUCCGa---AUG- -5'
28744 3' -56.9 NC_006146.1 + 95537 0.69 0.739459
Target:  5'- uGGGGC-CCaGCUUGGGGCAGcGUaugACa -3'
miRNA:   3'- -UCCCGuGGaUGAGCUCCGUC-CGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92341 0.66 0.877476
Target:  5'- uGGGGCAgCUGauaUGGGGC-GGCUcGCa -3'
miRNA:   3'- -UCCCGUgGAUga-GCUCCGuCCGAaUG- -5'
28744 3' -56.9 NC_006146.1 + 92311 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92281 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92253 0.68 0.795957
Target:  5'- -uGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- ucCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92221 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92191 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92161 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92131 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92101 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92072 0.67 0.804907
Target:  5'- uGGGGCugCUGCUgGgGGGC-GGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgC-UCCGuCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92042 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 92012 0.76 0.34158
Target:  5'- uGGGGCugCUGCUgGGGGgCGGGCccgGCc -3'
miRNA:   3'- -UCCCGugGAUGAgCUCC-GUCCGaa-UG- -5'
28744 3' -56.9 NC_006146.1 + 90649 0.68 0.795957
Target:  5'- gGGaGGCGCCgcggCGAGGguGGCa--- -3'
miRNA:   3'- -UC-CCGUGGaugaGCUCCguCCGaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.