Results 21 - 40 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28744 | 5' | -59.9 | NC_006146.1 | + | 146108 | 0.72 | 0.431788 |
Target: 5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3' miRNA: 3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 158421 | 0.72 | 0.431788 |
Target: 5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3' miRNA: 3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 86578 | 0.71 | 0.484823 |
Target: 5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3' miRNA: 3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 86544 | 0.71 | 0.484823 |
Target: 5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3' miRNA: 3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 166265 | 0.71 | 0.457446 |
Target: 5'- gGGUAuauGUUcuGGGCCCGcAGGGUCugCa -3' miRNA: 3'- aCCAUu--CGG--UCCGGGC-UCCCAGugGa -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 86612 | 0.71 | 0.484823 |
Target: 5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3' miRNA: 3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 33187 | 0.71 | 0.484823 |
Target: 5'- gGGUAGGcCCGGGCacccCCGGGGGgagGCCg -3' miRNA: 3'- aCCAUUC-GGUCCG----GGCUCCCag-UGGa -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 155552 | 0.71 | 0.484823 |
Target: 5'- aGGgcguugGAGCCGGGCUCGcgcGGGG-CGCCc -3' miRNA: 3'- aCCa-----UUCGGUCCGGGC---UCCCaGUGGa -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 56583 | 0.71 | 0.475608 |
Target: 5'- gGGgcGGCCGGGCgCCGAGcccgccgccGGUCuCCUc -3' miRNA: 3'- aCCauUCGGUCCG-GGCUC---------CCAGuGGA- -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 33547 | 0.71 | 0.439661 |
Target: 5'- cGGcuuGCCuGGCCCuggugcuccuccGGGGGUCGCCg -3' miRNA: 3'- aCCauuCGGuCCGGG------------CUCCCAGUGGa -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 41402 | 0.71 | 0.475608 |
Target: 5'- aGGUGGGCCugauguccGCCUGGGGGgCACCc -3' miRNA: 3'- aCCAUUCGGuc------CGGGCUCCCaGUGGa -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 46905 | 0.71 | 0.457446 |
Target: 5'- aGcGUAGGCCGGGUUgaGGGGGUCGCa- -3' miRNA: 3'- aC-CAUUCGGUCCGGg-CUCCCAGUGga -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 57224 | 0.71 | 0.439661 |
Target: 5'- cGG-AGGCCGGGCCCGGGcccgaGcCACCUc -3' miRNA: 3'- aCCaUUCGGUCCGGGCUCc----CaGUGGA- -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 60939 | 0.7 | 0.492256 |
Target: 5'- aGGUAGagacuGCUuucauugAGGCCCGgggguggGGGGUCACCUu -3' miRNA: 3'- aCCAUU-----CGG-------UCCGGGC-------UCCCAGUGGA- -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 34073 | 0.7 | 0.494122 |
Target: 5'- gUGGcacgGGGCCGGGgguCCCGGGGGgcaGCCg -3' miRNA: 3'- -ACCa---UUCGGUCC---GGGCUCCCag-UGGa -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 33967 | 0.7 | 0.512959 |
Target: 5'- gGGUGGGCguGGUCCGcuGGGUcCGCUg -3' miRNA: 3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 153306 | 0.7 | 0.512959 |
Target: 5'- aGGca--CCAGGCCCGGGccaGGUCGCCc -3' miRNA: 3'- aCCauucGGUCCGGGCUC---CCAGUGGa -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 161068 | 0.7 | 0.512959 |
Target: 5'- gGGUGAGCCuaGGGCCCGAGa-UCAUg- -3' miRNA: 3'- aCCAUUCGG--UCCGGGCUCccAGUGga -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 137014 | 0.7 | 0.522488 |
Target: 5'- gGGUAGGCCGGGCacaccCCGGGGaGgagGCCg -3' miRNA: 3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5' |
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28744 | 5' | -59.9 | NC_006146.1 | + | 162416 | 0.7 | 0.503502 |
Target: 5'- gUGGUGGGCaCGGGCuaGGGGuGUCAgCUc -3' miRNA: 3'- -ACCAUUCG-GUCCGggCUCC-CAGUgGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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