miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 5' -59.9 NC_006146.1 + 28271 0.68 0.649509
Target:  5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3'
miRNA:   3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 28372 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28744 5' -59.9 NC_006146.1 + 30246 0.66 0.76572
Target:  5'- cGGaaauuGGCCgcaaaaaGGGCUguaGAGGGUCACCc -3'
miRNA:   3'- aCCau---UCGG-------UCCGGg--CUCCCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 33103 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGcGGGUuCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28744 5' -59.9 NC_006146.1 + 33187 0.71 0.484823
Target:  5'- gGGUAGGcCCGGGCacccCCGGGGGgagGCCg -3'
miRNA:   3'- aCCAUUC-GGUCCG----GGCUCCCag-UGGa -5'
28744 5' -59.9 NC_006146.1 + 33227 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGcGGGUcCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28744 5' -59.9 NC_006146.1 + 33349 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGuGGGUcCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28744 5' -59.9 NC_006146.1 + 33547 0.71 0.439661
Target:  5'- cGGcuuGCCuGGCCCuggugcuccuccGGGGGUCGCCg -3'
miRNA:   3'- aCCauuCGGuCCGGG------------CUCCCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 33603 0.73 0.364838
Target:  5'- gGGUGGGCguGGUCCGcGGGUucggugCACCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCuCCCA------GUGGA- -5'
28744 5' -59.9 NC_006146.1 + 33749 0.69 0.590792
Target:  5'- cGGUGGGUguGGUCCGcuGGGUcCGCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5'
28744 5' -59.9 NC_006146.1 + 33781 0.74 0.325081
Target:  5'- gGGUGGGCguGGUCCGAuGGGUCcgcggguuuggugcACCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCU-CCCAG--------------UGGA- -5'
28744 5' -59.9 NC_006146.1 + 33967 0.7 0.512959
Target:  5'- gGGUGGGCguGGUCCGcuGGGUcCGCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5'
28744 5' -59.9 NC_006146.1 + 34073 0.7 0.494122
Target:  5'- gUGGcacgGGGCCGGGgguCCCGGGGGgcaGCCg -3'
miRNA:   3'- -ACCa---UUCGGUCC---GGGCUCCCag-UGGa -5'
28744 5' -59.9 NC_006146.1 + 34405 0.66 0.72902
Target:  5'- aGGUGuGUCAuuuuaGCCCGuuGGGUUACCUg -3'
miRNA:   3'- aCCAUuCGGUc----CGGGCu-CCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 40733 0.67 0.7097
Target:  5'- cGGgcAGgCGGGCCCGugcuuGGGGcUgGCCa -3'
miRNA:   3'- aCCauUCgGUCCGGGC-----UCCC-AgUGGa -5'
28744 5' -59.9 NC_006146.1 + 41099 0.67 0.723254
Target:  5'- aGGgGAGCCAGGCgUGcagggccuccacuuuAGGGUC-CCg -3'
miRNA:   3'- aCCaUUCGGUCCGgGC---------------UCCCAGuGGa -5'
28744 5' -59.9 NC_006146.1 + 41402 0.71 0.475608
Target:  5'- aGGUGGGCCugauguccGCCUGGGGGgCACCc -3'
miRNA:   3'- aCCAUUCGGuc------CGGGCUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 42381 0.67 0.7097
Target:  5'- gGGUGGGCgAGgggcGCCCcAGGGcCACCc -3'
miRNA:   3'- aCCAUUCGgUC----CGGGcUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 44777 0.66 0.738566
Target:  5'- gGGUGccguGCCGGGCUCaGGGGGgCGCa- -3'
miRNA:   3'- aCCAUu---CGGUCCGGG-CUCCCaGUGga -5'
28744 5' -59.9 NC_006146.1 + 46905 0.71 0.457446
Target:  5'- aGcGUAGGCCGGGUUgaGGGGGUCGCa- -3'
miRNA:   3'- aC-CAUUCGGUCCGGg-CUCCCAGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.