miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 5' -59.9 NC_006146.1 + 152264 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28744 5' -59.9 NC_006146.1 + 158421 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28744 5' -59.9 NC_006146.1 + 57224 0.71 0.439661
Target:  5'- cGG-AGGCCGGGCCCGGGcccgaGcCACCUc -3'
miRNA:   3'- aCCaUUCGGUCCGGGCUCc----CaGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 33547 0.71 0.439661
Target:  5'- cGGcuuGCCuGGCCCuggugcuccuccGGGGGUCGCCg -3'
miRNA:   3'- aCCauuCGGuCCGGG------------CUCCCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 46905 0.71 0.457446
Target:  5'- aGcGUAGGCCGGGUUgaGGGGGUCGCa- -3'
miRNA:   3'- aC-CAUUCGGUCCGGg-CUCCCAGUGga -5'
28744 5' -59.9 NC_006146.1 + 166265 0.71 0.457446
Target:  5'- gGGUAuauGUUcuGGGCCCGcAGGGUCugCa -3'
miRNA:   3'- aCCAUu--CGG--UCCGGGC-UCCCAGugGa -5'
28744 5' -59.9 NC_006146.1 + 56583 0.71 0.475608
Target:  5'- gGGgcGGCCGGGCgCCGAGcccgccgccGGUCuCCUc -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUC---------CCAGuGGA- -5'
28744 5' -59.9 NC_006146.1 + 41402 0.71 0.475608
Target:  5'- aGGUGGGCCugauguccGCCUGGGGGgCACCc -3'
miRNA:   3'- aCCAUUCGGuc------CGGGCUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 155552 0.71 0.484823
Target:  5'- aGGgcguugGAGCCGGGCUCGcgcGGGG-CGCCc -3'
miRNA:   3'- aCCa-----UUCGGUCCGGGC---UCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 86544 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28744 5' -59.9 NC_006146.1 + 86578 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28744 5' -59.9 NC_006146.1 + 86612 0.71 0.484823
Target:  5'- gGGgcAGCUGGGCuuGAGGGgCAgCUg -3'
miRNA:   3'- aCCauUCGGUCCGggCUCCCaGUgGA- -5'
28744 5' -59.9 NC_006146.1 + 33187 0.71 0.484823
Target:  5'- gGGUAGGcCCGGGCacccCCGGGGGgagGCCg -3'
miRNA:   3'- aCCAUUC-GGUCCG----GGCUCCCag-UGGa -5'
28744 5' -59.9 NC_006146.1 + 60939 0.7 0.492256
Target:  5'- aGGUAGagacuGCUuucauugAGGCCCGgggguggGGGGUCACCUu -3'
miRNA:   3'- aCCAUU-----CGG-------UCCGGGC-------UCCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 34073 0.7 0.494122
Target:  5'- gUGGcacgGGGCCGGGgguCCCGGGGGgcaGCCg -3'
miRNA:   3'- -ACCa---UUCGGUCC---GGGCUCCCag-UGGa -5'
28744 5' -59.9 NC_006146.1 + 162416 0.7 0.503502
Target:  5'- gUGGUGGGCaCGGGCuaGGGGuGUCAgCUc -3'
miRNA:   3'- -ACCAUUCG-GUCCGggCUCC-CAGUgGA- -5'
28744 5' -59.9 NC_006146.1 + 153306 0.7 0.512959
Target:  5'- aGGca--CCAGGCCCGGGccaGGUCGCCc -3'
miRNA:   3'- aCCauucGGUCCGGGCUC---CCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 33967 0.7 0.512959
Target:  5'- gGGUGGGCguGGUCCGcuGGGUcCGCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5'
28744 5' -59.9 NC_006146.1 + 161068 0.7 0.512959
Target:  5'- gGGUGAGCCuaGGGCCCGAGa-UCAUg- -3'
miRNA:   3'- aCCAUUCGG--UCCGGGCUCccAGUGga -5'
28744 5' -59.9 NC_006146.1 + 137014 0.7 0.522488
Target:  5'- gGGUAGGCCGGGCacaccCCGGGGaGgagGCCg -3'
miRNA:   3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.