miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28744 5' -59.9 NC_006146.1 + 159894 0.66 0.738566
Target:  5'- aGGgccucgAGGCCgGGGCCCucgaagauGGGGGgCACCa -3'
miRNA:   3'- aCCa-----UUCGG-UCCGGG--------CUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 159521 0.66 0.77669
Target:  5'- gGGgccaauGGCCucgaguuuuuucauuGGCCCGAGGGcuUCGCUc -3'
miRNA:   3'- aCCau----UCGGu--------------CCGGGCUCCC--AGUGGa -5'
28744 5' -59.9 NC_006146.1 + 158421 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28744 5' -59.9 NC_006146.1 + 157750 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 156771 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 156718 0.68 0.630577
Target:  5'- -----cGuCCAGGCuCCGGGGGUCcaGCCUg -3'
miRNA:   3'- accauuC-GGUCCG-GGCUCCCAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 155789 0.66 0.72902
Target:  5'- ---aGAGCCGcucgguGGCCCuGGGGGcCACCg -3'
miRNA:   3'- accaUUCGGU------CCGGG-CUCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 155552 0.71 0.484823
Target:  5'- aGGgcguugGAGCCGGGCUCGcgcGGGG-CGCCc -3'
miRNA:   3'- aCCa-----UUCGGUCCGGGC---UCCCaGUGGa -5'
28744 5' -59.9 NC_006146.1 + 155342 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28744 5' -59.9 NC_006146.1 + 153693 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 153306 0.7 0.512959
Target:  5'- aGGca--CCAGGCCCGGGccaGGUCGCCc -3'
miRNA:   3'- aCCauucGGUCCGGGCUC---CCAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 152264 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28744 5' -59.9 NC_006146.1 + 151595 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 150616 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 149186 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28744 5' -59.9 NC_006146.1 + 148517 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5'
28744 5' -59.9 NC_006146.1 + 147538 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28744 5' -59.9 NC_006146.1 + 146851 0.66 0.757384
Target:  5'- ---cGGGCCuGGCUCGGGGccgcGUCACCc -3'
miRNA:   3'- accaUUCGGuCCGGGCUCC----CAGUGGa -5'
28744 5' -59.9 NC_006146.1 + 146108 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28744 5' -59.9 NC_006146.1 + 145439 0.67 0.690129
Target:  5'- gGGUcuuGGGCCugggAGGUCCGGGGuGUUgaGCCUg -3'
miRNA:   3'- aCCA---UUCGG----UCCGGGCUCC-CAG--UGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.