miRNA display CGI


Results 61 - 80 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28748 5' -53.6 NC_006146.1 + 24600 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 27678 0.67 0.940416
Target:  5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3'
miRNA:   3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 138124 0.67 0.949464
Target:  5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3'
miRNA:   3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 19428 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 147179 0.67 0.949464
Target:  5'- -cGCAGAccGGCGCCCcu-UCGCC-Cg -3'
miRNA:   3'- ucUGUUUuaCCGCGGGucuAGCGGaG- -5'
28748 5' -53.6 NC_006146.1 + 42709 0.67 0.935523
Target:  5'- cGGCGccgcGGCGCCCcccuGGGcCGCCUCc -3'
miRNA:   3'- uCUGUuuuaCCGCGGG----UCUaGCGGAG- -5'
28748 5' -53.6 NC_006146.1 + 143693 0.67 0.949034
Target:  5'- gGGACAGAGuuagaaguuagccUGGgGCCuCGGAggGCCUg -3'
miRNA:   3'- -UCUGUUUU-------------ACCgCGG-GUCUagCGGAg -5'
28748 5' -53.6 NC_006146.1 + 105700 0.67 0.949463
Target:  5'- cGGGCucccagGGCcCCCAGAgCGCCUa -3'
miRNA:   3'- -UCUGuuuua-CCGcGGGUCUaGCGGAg -5'
28748 5' -53.6 NC_006146.1 + 25584 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 22506 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 16350 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 13272 0.67 0.949464
Target:  5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3'
miRNA:   3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5'
28748 5' -53.6 NC_006146.1 + 89683 0.67 0.945062
Target:  5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3'
miRNA:   3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5'
28748 5' -53.6 NC_006146.1 + 120760 0.66 0.956396
Target:  5'- cGACGAGcgcuggcGGCGCCUcaugucccuggcggAGGUCGCCg- -3'
miRNA:   3'- uCUGUUUua-----CCGCGGG--------------UCUAGCGGag -5'
28748 5' -53.6 NC_006146.1 + 143642 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28748 5' -53.6 NC_006146.1 + 6013 0.66 0.970962
Target:  5'- gAGGCAAcgaGG-GCCCAGAUCcUCUCc -3'
miRNA:   3'- -UCUGUUuuaCCgCGGGUCUAGcGGAG- -5'
28748 5' -53.6 NC_006146.1 + 146719 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28748 5' -53.6 NC_006146.1 + 149797 0.66 0.957548
Target:  5'- cGGugGAGGUGGC-CCCGGG-CGCa-- -3'
miRNA:   3'- -UCugUUUUACCGcGGGUCUaGCGgag -5'
28748 5' -53.6 NC_006146.1 + 128180 0.66 0.970962
Target:  5'- cGACGccGGGaGGCgGCCCAGGggggCGCCg- -3'
miRNA:   3'- uCUGU--UUUaCCG-CGGGUCUa---GCGGag -5'
28748 5' -53.6 NC_006146.1 + 42384 0.66 0.967939
Target:  5'- uGGGCGAGG-GGCGcCCCAGGgccaccccgaCGCCg- -3'
miRNA:   3'- -UCUGUUUUaCCGC-GGGUCUa---------GCGGag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.