Results 61 - 80 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28748 | 5' | -53.6 | NC_006146.1 | + | 27678 | 0.67 | 0.940416 |
Target: 5'- gGGugGGAucaGGCuaaCCCAaGUCGCCUCa -3' miRNA: 3'- -UCugUUUua-CCGc--GGGUcUAGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 89683 | 0.67 | 0.945062 |
Target: 5'- cGACGGAA-GGgGCCCGGGgaacgGCCUg -3' miRNA: 3'- uCUGUUUUaCCgCGGGUCUag---CGGAg -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 99817 | 0.67 | 0.945062 |
Target: 5'- cGGCGAGggGGUGUUCGGG--GCCUCg -3' miRNA: 3'- uCUGUUUuaCCGCGGGUCUagCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 47714 | 0.67 | 0.945062 |
Target: 5'- aGGugGGGAgcaGCGCCCGGAgcUCGUCg- -3' miRNA: 3'- -UCugUUUUac-CGCGGGUCU--AGCGGag -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 34294 | 0.67 | 0.949464 |
Target: 5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3' miRNA: 3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 138124 | 0.67 | 0.949464 |
Target: 5'- uGGACGAcgcUGGCGaccccggCCAGcgCGCCUUc -3' miRNA: 3'- -UCUGUUuu-ACCGCg------GGUCuaGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 13272 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 16350 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 19428 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 22506 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 25584 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 28662 | 0.67 | 0.949464 |
Target: 5'- gGGACc----GGCGCCCcagagccccucGGGUCcGCCUCc -3' miRNA: 3'- -UCUGuuuuaCCGCGGG-----------UCUAG-CGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 147179 | 0.67 | 0.949464 |
Target: 5'- -cGCAGAccGGCGCCCcu-UCGCC-Cg -3' miRNA: 3'- ucUGUUUuaCCGCGGGucuAGCGGaG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 118247 | 0.66 | 0.970962 |
Target: 5'- gGGGCGAGGcUGGaCGCCCucaugCGCCa- -3' miRNA: 3'- -UCUGUUUU-ACC-GCGGGucua-GCGGag -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 120598 | 0.66 | 0.970962 |
Target: 5'- uGGACAAGGcccggcGGCGCCugaCAGAUCuCCUg -3' miRNA: 3'- -UCUGUUUUa-----CCGCGG---GUCUAGcGGAg -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 6013 | 0.66 | 0.970962 |
Target: 5'- gAGGCAAcgaGG-GCCCAGAUCcUCUCc -3' miRNA: 3'- -UCUGUUuuaCCgCGGGUCUAGcGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 89848 | 0.66 | 0.967939 |
Target: 5'- -aACAcuuuGUGGCGCguCCucGAUUGCCUCa -3' miRNA: 3'- ucUGUuu--UACCGCG--GGu-CUAGCGGAG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 43372 | 0.66 | 0.967939 |
Target: 5'- gAGACGGAGuUGGUgaaGUUCAGGUUGCCccUCa -3' miRNA: 3'- -UCUGUUUU-ACCG---CGGGUCUAGCGG--AG- -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 42384 | 0.66 | 0.967939 |
Target: 5'- uGGGCGAGG-GGCGcCCCAGGgccaccccgaCGCCg- -3' miRNA: 3'- -UCUGUUUUaCCGC-GGGUCUa---------GCGGag -5' |
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28748 | 5' | -53.6 | NC_006146.1 | + | 161762 | 0.66 | 0.966022 |
Target: 5'- gAGGucCGAGggGGCGCCUGGGcgggggccugaaucuUCGCCUg -3' miRNA: 3'- -UCU--GUUUuaCCGCGGGUCU---------------AGCGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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