miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28753 5' -59.9 NC_006146.1 + 156771 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28753 5' -59.9 NC_006146.1 + 150616 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28753 5' -59.9 NC_006146.1 + 147538 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28753 5' -59.9 NC_006146.1 + 144460 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28753 5' -59.9 NC_006146.1 + 141382 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28753 5' -59.9 NC_006146.1 + 153693 1.08 0.001575
Target:  5'- aUGGUAAGCCAGGCCCGAGGGUCACCUa -3'
miRNA:   3'- -ACCAUUCGGUCCGGGCUCCCAGUGGA- -5'
28753 5' -59.9 NC_006146.1 + 94803 0.9 0.02898
Target:  5'- -cGUAGGCCAGGCCCGGGGGUUGCCc -3'
miRNA:   3'- acCAUUCGGUCCGGGCUCCCAGUGGa -5'
28753 5' -59.9 NC_006146.1 + 161751 0.76 0.232024
Target:  5'- gGGUGgcGGCUgAGGUCCGAGGGggCGCCUg -3'
miRNA:   3'- aCCAU--UCGG-UCCGGGCUCCCa-GUGGA- -5'
28753 5' -59.9 NC_006146.1 + 33781 0.74 0.325081
Target:  5'- gGGUGGGCguGGUCCGAuGGGUCcgcggguuuggugcACCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCU-CCCAG--------------UGGA- -5'
28753 5' -59.9 NC_006146.1 + 77923 0.74 0.334527
Target:  5'- cGGgcGGCCucgcAGGUgCCGGGGGUCGCUg -3'
miRNA:   3'- aCCauUCGG----UCCG-GGCUCCCAGUGGa -5'
28753 5' -59.9 NC_006146.1 + 170522 0.73 0.348691
Target:  5'- cGGcGGGCgGGGCCUGAGGGggcgcggcgauugUCGCCg -3'
miRNA:   3'- aCCaUUCGgUCCGGGCUCCC-------------AGUGGa -5'
28753 5' -59.9 NC_006146.1 + 137784 0.73 0.354782
Target:  5'- gGGUGGGCCuGGUCCGccggauccgcuucgGGGGUcCGCCg -3'
miRNA:   3'- aCCAUUCGGuCCGGGC--------------UCCCA-GUGGa -5'
28753 5' -59.9 NC_006146.1 + 33603 0.73 0.364838
Target:  5'- gGGUGGGCguGGUCCGcGGGUucggugCACCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCuCCCA------GUGGA- -5'
28753 5' -59.9 NC_006146.1 + 116097 0.72 0.388786
Target:  5'- aUGGUGgcGGCCA--CCCGAGGGUCcCCg -3'
miRNA:   3'- -ACCAU--UCGGUccGGGCUCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 24049 0.72 0.411203
Target:  5'- gGGUgacgcggccccGAGCCAGGCCCGGGcucuacgcuggcgcGGccUCGCCUg -3'
miRNA:   3'- aCCA-----------UUCGGUCCGGGCUC--------------CC--AGUGGA- -5'
28753 5' -59.9 NC_006146.1 + 137201 0.72 0.422278
Target:  5'- gGGUAGGCCGGGCacaccCCGGGGaGgaaGCCg -3'
miRNA:   3'- aCCAUUCGGUCCG-----GGCUCC-Cag-UGGa -5'
28753 5' -59.9 NC_006146.1 + 158421 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28753 5' -59.9 NC_006146.1 + 149186 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28753 5' -59.9 NC_006146.1 + 146108 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5'
28753 5' -59.9 NC_006146.1 + 152264 0.72 0.431788
Target:  5'- aUGGggAAGCCggaguccagagGGGCCCGAGGGccugaaaggccccggCGCCUg -3'
miRNA:   3'- -ACCa-UUCGG-----------UCCGGGCUCCCa--------------GUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.