miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28753 5' -59.9 NC_006146.1 + 94803 0.9 0.02898
Target:  5'- -cGUAGGCCAGGCCCGGGGGUUGCCc -3'
miRNA:   3'- acCAUUCGGUCCGGGCUCCCAGUGGa -5'
28753 5' -59.9 NC_006146.1 + 33227 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGcGGGUcCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28753 5' -59.9 NC_006146.1 + 127573 0.69 0.571044
Target:  5'- aGGUGGuGUCGGuGCUCGAGGG-CACUa -3'
miRNA:   3'- aCCAUU-CGGUC-CGGGCUCCCaGUGGa -5'
28753 5' -59.9 NC_006146.1 + 28372 0.66 0.775783
Target:  5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3'
miRNA:   3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5'
28753 5' -59.9 NC_006146.1 + 33603 0.73 0.364838
Target:  5'- gGGUGGGCguGGUCCGcGGGUucggugCACCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCuCCCA------GUGGA- -5'
28753 5' -59.9 NC_006146.1 + 116097 0.72 0.388786
Target:  5'- aUGGUGgcGGCCA--CCCGAGGGUCcCCg -3'
miRNA:   3'- -ACCAU--UCGGUccGGGCUCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 46905 0.71 0.457446
Target:  5'- aGcGUAGGCCGGGUUgaGGGGGUCGCa- -3'
miRNA:   3'- aC-CAUUCGGUCCGGg-CUCCCAGUGga -5'
28753 5' -59.9 NC_006146.1 + 41402 0.71 0.475608
Target:  5'- aGGUGGGCCugauguccGCCUGGGGGgCACCc -3'
miRNA:   3'- aCCAUUCGGuc------CGGGCUCCCaGUGGa -5'
28753 5' -59.9 NC_006146.1 + 60939 0.7 0.492256
Target:  5'- aGGUAGagacuGCUuucauugAGGCCCGgggguggGGGGUCACCUu -3'
miRNA:   3'- aCCAUU-----CGG-------UCCGGGC-------UCCCAGUGGA- -5'
28753 5' -59.9 NC_006146.1 + 33103 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGcGGGUuCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28753 5' -59.9 NC_006146.1 + 33967 0.7 0.512959
Target:  5'- gGGUGGGCguGGUCCGcuGGGUcCGCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCu-CCCA-GUGGa -5'
28753 5' -59.9 NC_006146.1 + 155552 0.71 0.484823
Target:  5'- aGGgcguugGAGCCGGGCUCGcgcGGGG-CGCCc -3'
miRNA:   3'- aCCa-----UUCGGUCCGGGC---UCCCaGUGGa -5'
28753 5' -59.9 NC_006146.1 + 33781 0.74 0.325081
Target:  5'- gGGUGGGCguGGUCCGAuGGGUCcgcggguuuggugcACCUg -3'
miRNA:   3'- aCCAUUCGguCCGGGCU-CCCAG--------------UGGA- -5'
28753 5' -59.9 NC_006146.1 + 153306 0.7 0.512959
Target:  5'- aGGca--CCAGGCCCGGGccaGGUCGCCc -3'
miRNA:   3'- aCCauucGGUCCGGGCUC---CCAGUGGa -5'
28753 5' -59.9 NC_006146.1 + 170522 0.73 0.348691
Target:  5'- cGGcGGGCgGGGCCUGAGGGggcgcggcgauugUCGCCg -3'
miRNA:   3'- aCCaUUCGgUCCGGGCUCCC-------------AGUGGa -5'
28753 5' -59.9 NC_006146.1 + 56583 0.71 0.475608
Target:  5'- gGGgcGGCCGGGCgCCGAGcccgccgccGGUCuCCUc -3'
miRNA:   3'- aCCauUCGGUCCG-GGCUC---------CCAGuGGA- -5'
28753 5' -59.9 NC_006146.1 + 161068 0.7 0.512959
Target:  5'- gGGUGAGCCuaGGGCCCGAGa-UCAUg- -3'
miRNA:   3'- aCCAUUCGG--UCCGGGCUCccAGUGga -5'
28753 5' -59.9 NC_006146.1 + 33349 0.69 0.551459
Target:  5'- gGGgcAGCCGGGUggccgCCGGuGGGUcCGCCg -3'
miRNA:   3'- aCCauUCGGUCCG-----GGCU-CCCA-GUGGa -5'
28753 5' -59.9 NC_006146.1 + 137784 0.73 0.354782
Target:  5'- gGGUGGGCCuGGUCCGccggauccgcuucgGGGGUcCGCCg -3'
miRNA:   3'- aCCAUUCGGuCCGGGC--------------UCCCA-GUGGa -5'
28753 5' -59.9 NC_006146.1 + 33547 0.71 0.439661
Target:  5'- cGGcuuGCCuGGCCCuggugcuccuccGGGGGUCGCCg -3'
miRNA:   3'- aCCauuCGGuCCGGG------------CUCCCAGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.