Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28753 | 5' | -59.9 | NC_006146.1 | + | 3814 | 0.66 | 0.72902 |
Target: 5'- aGGUcuGGGUCAGGCCaggcGGGG-CACCc -3' miRNA: 3'- aCCA--UUCGGUCCGGgc--UCCCaGUGGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 9547 | 0.67 | 0.719396 |
Target: 5'- --uUGAGUCAGGUCUGAGaGGUUGCUg -3' miRNA: 3'- accAUUCGGUCCGGGCUC-CCAGUGGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 12837 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 12882 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 12982 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 14811 | 0.67 | 0.7097 |
Target: 5'- aGGccGGCCGGGCCgGAGGaGggCACg- -3' miRNA: 3'- aCCauUCGGUCCGGgCUCC-Ca-GUGga -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 15916 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 15960 | 0.68 | 0.630577 |
Target: 5'- gGGcAGGCCggucucGGGUCUGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGG------UCCGGGCUCCCAGugGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 16060 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 18993 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 19037 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 19138 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 22071 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 22115 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 22216 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 24049 | 0.72 | 0.411203 |
Target: 5'- gGGUgacgcggccccGAGCCAGGCCCGGGcucuacgcuggcgcGGccUCGCCUg -3' miRNA: 3'- aCCA-----------UUCGGUCCGGGCUC--------------CC--AGUGGA- -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 25149 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 25193 | 0.68 | 0.649509 |
Target: 5'- gGGcAGGCCGGGUCUcgggucuGGGGGUCugUg -3' miRNA: 3'- aCCaUUCGGUCCGGG-------CUCCCAGugGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 25294 | 0.66 | 0.775783 |
Target: 5'- aGaGUcGGCCuAGGCCCGgggaguggagGGGGaUCGCCc -3' miRNA: 3'- aC-CAuUCGG-UCCGGGC----------UCCC-AGUGGa -5' |
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28753 | 5' | -59.9 | NC_006146.1 | + | 28227 | 0.67 | 0.719396 |
Target: 5'- cGGc-GGCCGGaCCCGAGGaGgCGCCUg -3' miRNA: 3'- aCCauUCGGUCcGGGCUCC-CaGUGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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