miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28753 5' -59.9 NC_006146.1 + 170673 0.67 0.7097
Target:  5'- cGGgggAGGCCAGGggcgcCCCGGGGaccGUCGCg- -3'
miRNA:   3'- aCCa--UUCGGUCC-----GGGCUCC---CAGUGga -5'
28753 5' -59.9 NC_006146.1 + 170603 0.66 0.76664
Target:  5'- gUGGcGAgcgcGCCGGGCCCGcccccGGGUCuucCCg -3'
miRNA:   3'- -ACCaUU----CGGUCCGGGCu----CCCAGu--GGa -5'
28753 5' -59.9 NC_006146.1 + 170522 0.73 0.348691
Target:  5'- cGGcGGGCgGGGCCUGAGGGggcgcggcgauugUCGCCg -3'
miRNA:   3'- aCCaUUCGgUCCGGGCUCCC-------------AGUGGa -5'
28753 5' -59.9 NC_006146.1 + 170194 0.66 0.773053
Target:  5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3'
miRNA:   3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 169977 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 169263 0.66 0.773053
Target:  5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3'
miRNA:   3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 169163 0.67 0.7097
Target:  5'- cGGgagGGGCCGGcGCCUGcAGGGgggGCCg -3'
miRNA:   3'- aCCa--UUCGGUC-CGGGC-UCCCag-UGGa -5'
28753 5' -59.9 NC_006146.1 + 169045 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 168657 0.66 0.737615
Target:  5'- cGcGUcGGUgGGGCCUGAGGGggcgcggcgauugUCGCCg -3'
miRNA:   3'- aC-CAuUCGgUCCGGGCUCCC-------------AGUGGa -5'
28753 5' -59.9 NC_006146.1 + 168331 0.66 0.773053
Target:  5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3'
miRNA:   3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 168231 0.67 0.7097
Target:  5'- cGGgagGGGCCGGcGCCUGcAGGGgggGCCg -3'
miRNA:   3'- aCCa--UUCGGUC-CGGGC-UCCCag-UGGa -5'
28753 5' -59.9 NC_006146.1 + 168113 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 167399 0.66 0.773053
Target:  5'- aGGgcgGGGCCgGGGCCUGgcgggggccagcgcGGGGUC-CCg -3'
miRNA:   3'- aCCa--UUCGG-UCCGGGC--------------UCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 167299 0.67 0.7097
Target:  5'- cGGgagGGGCCGGcGCCUGcAGGGgggGCCg -3'
miRNA:   3'- aCCa--UUCGGUC-CGGGC-UCCCag-UGGa -5'
28753 5' -59.9 NC_006146.1 + 167181 0.68 0.640544
Target:  5'- cGGgaGGCCGGcgcgcGCCCG-GGGUC-CCg -3'
miRNA:   3'- aCCauUCGGUC-----CGGGCuCCCAGuGGa -5'
28753 5' -59.9 NC_006146.1 + 166364 0.66 0.748023
Target:  5'- aGGUAGucggcggcuGCC-GGCaCCGAGauGGUCACCc -3'
miRNA:   3'- aCCAUU---------CGGuCCG-GGCUC--CCAGUGGa -5'
28753 5' -59.9 NC_006146.1 + 166265 0.71 0.457446
Target:  5'- gGGUAuauGUUcuGGGCCCGcAGGGUCugCa -3'
miRNA:   3'- aCCAUu--CGG--UCCGGGC-UCCCAGugGa -5'
28753 5' -59.9 NC_006146.1 + 162416 0.7 0.503502
Target:  5'- gUGGUGGGCaCGGGCuaGGGGuGUCAgCUc -3'
miRNA:   3'- -ACCAUUCG-GUCCGggCUCC-CAGUgGA- -5'
28753 5' -59.9 NC_006146.1 + 161751 0.76 0.232024
Target:  5'- gGGUGgcGGCUgAGGUCCGAGGGggCGCCUg -3'
miRNA:   3'- aCCAU--UCGG-UCCGGGCUCCCa-GUGGA- -5'
28753 5' -59.9 NC_006146.1 + 161068 0.7 0.512959
Target:  5'- gGGUGAGCCuaGGGCCCGAGa-UCAUg- -3'
miRNA:   3'- aCCAUUCGG--UCCGGGCUCccAGUGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.