Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28757 | 3' | -49.1 | NC_006146.1 | + | 94952 | 0.67 | 0.995817 |
Target: 5'- -cGCUGCgguAGAGGGGGGUgUGCAGccAGg -3' miRNA: 3'- uuUGACG---UCUUUUCCCG-ACGUCuaUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 107392 | 0.68 | 0.988265 |
Target: 5'- aAAGCguaGCAGGGuccAGGGCUGCGGcGUGc -3' miRNA: 3'- -UUUGa--CGUCUUu--UCCCGACGUC-UAUc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 89464 | 0.68 | 0.989742 |
Target: 5'- -uGCaGCGGGAGuuuucuGGGUUGCGGGUAa -3' miRNA: 3'- uuUGaCGUCUUUu-----CCCGACGUCUAUc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 168246 | 0.67 | 0.995087 |
Target: 5'- --cCUGCAGggG-GGGCcgGCGGGg-- -3' miRNA: 3'- uuuGACGUCuuUuCCCGa-CGUCUauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 51465 | 0.66 | 0.997494 |
Target: 5'- aGAGgUGUGGAGAugggcgGGGGCUGCGGc--- -3' miRNA: 3'- -UUUgACGUCUUU------UCCCGACGUCuauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 159830 | 0.68 | 0.989742 |
Target: 5'- gGAGCUGUcccuAGAGAGGGcGCUGUAGc--- -3' miRNA: 3'- -UUUGACG----UCUUUUCC-CGACGUCuauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 131602 | 0.67 | 0.993317 |
Target: 5'- -uACUGUGGuaguGGGGGCUGUGGuaGUGGg -3' miRNA: 3'- uuUGACGUCuu--UUCCCGACGUC--UAUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 169178 | 0.67 | 0.995087 |
Target: 5'- --cCUGCAGggG-GGGCcgGCGGGg-- -3' miRNA: 3'- uuuGACGUCuuUuCCCGa-CGUCUauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 52065 | 0.68 | 0.988265 |
Target: 5'- gAAACgguaGCAuGAcgGGAGGGCUGCGGucgGGg -3' miRNA: 3'- -UUUGa---CGU-CU--UUUCCCGACGUCua-UC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 103722 | 0.67 | 0.992258 |
Target: 5'- cGGACUGCGGAGGAagcGGGCgaaggUGUAGGa-- -3' miRNA: 3'- -UUUGACGUCUUUU---CCCG-----ACGUCUauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 167314 | 0.67 | 0.995087 |
Target: 5'- --cCUGCAGggG-GGGCcgGCGGGg-- -3' miRNA: 3'- uuuGACGUCuuUuCCCGa-CGUCUauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 165726 | 0.67 | 0.993317 |
Target: 5'- cAACUGCAGAGAagagagagcgGGGGUcagggagGgGGAUGGg -3' miRNA: 3'- uUUGACGUCUUU----------UCCCGa------CgUCUAUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 39775 | 0.67 | 0.992258 |
Target: 5'- cAGACgcgGCAGGugcuGGCUGgAGAUAGg -3' miRNA: 3'- -UUUGa--CGUCUuuucCCGACgUCUAUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 61829 | 0.66 | 0.997909 |
Target: 5'- -cGCUGguGggGgcaguGGGGCUGguGccGGg -3' miRNA: 3'- uuUGACguCuuU-----UCCCGACguCuaUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 140613 | 1.08 | 0.01207 |
Target: 5'- gAAACUGCAGAAAAGGGCUGCAGAUAGg -3' miRNA: 3'- -UUUGACGUCUUUUCCCGACGUCUAUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 132075 | 0.67 | 0.994257 |
Target: 5'- uGAGCUGCcccAGGcucAGGGccuGGCUGCAGAUGu -3' miRNA: 3'- -UUUGACG---UCU---UUUC---CCGACGUCUAUc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 148127 | 0.66 | 0.997494 |
Target: 5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3' miRNA: 3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 24186 | 0.68 | 0.991069 |
Target: 5'- uGGACaggGCAGAGGAGGGCUGgGccuGcgAGg -3' miRNA: 3'- -UUUGa--CGUCUUUUCCCGACgU---CuaUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 79120 | 0.68 | 0.991561 |
Target: 5'- uGAGCUGCAGGAAaucaagccaugggucGGGGaggaGCAGAUu- -3' miRNA: 3'- -UUUGACGUCUUU---------------UCCCga--CGUCUAuc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 72514 | 0.67 | 0.993317 |
Target: 5'- --cCUGCGGAGGAGcggacGGCUGCGGc--- -3' miRNA: 3'- uuuGACGUCUUUUC-----CCGACGUCuauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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