miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 3' -49.1 NC_006146.1 + 56158 0.66 0.997909
Target:  5'- cAAGCUGCAGcAGAGGauaGGCUGCGu---- -3'
miRNA:   3'- -UUUGACGUC-UUUUC---CCGACGUcuauc -5'
28757 3' -49.1 NC_006146.1 + 48227 0.66 0.997909
Target:  5'- ---aUG-AGAagGAGGGGCUGCAGAc-- -3'
miRNA:   3'- uuugACgUCU--UUUCCCGACGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 61829 0.66 0.997909
Target:  5'- -cGCUGguGggGgcaguGGGGCUGguGccGGg -3'
miRNA:   3'- uuUGACguCuuU-----UCCCGACguCuaUC- -5'
28757 3' -49.1 NC_006146.1 + 80703 0.66 0.997668
Target:  5'- cGAGCaGCgaAGAAGAGGGCggccgagauucggacUcGCAGAUGGa -3'
miRNA:   3'- -UUUGaCG--UCUUUUCCCG---------------A-CGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 96823 0.66 0.997494
Target:  5'- --cCUGguGggGAcGGGCggGCAGGuUGGg -3'
miRNA:   3'- uuuGACguCuuUU-CCCGa-CGUCU-AUC- -5'
28757 3' -49.1 NC_006146.1 + 54859 0.66 0.997494
Target:  5'- aAGGCgGCcgGGAAAAauGGGCUGCGGGcgUAGc -3'
miRNA:   3'- -UUUGaCG--UCUUUU--CCCGACGUCU--AUC- -5'
28757 3' -49.1 NC_006146.1 + 51465 0.66 0.997494
Target:  5'- aGAGgUGUGGAGAugggcgGGGGCUGCGGc--- -3'
miRNA:   3'- -UUUgACGUCUUU------UCCCGACGUCuauc -5'
28757 3' -49.1 NC_006146.1 + 141971 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 145049 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 148127 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 157361 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 154283 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 151205 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 60612 0.66 0.997012
Target:  5'- --cCUGCu----GGGGCUGCGGAg-- -3'
miRNA:   3'- uuuGACGucuuuUCCCGACGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 105314 0.66 0.996273
Target:  5'- cAGACUGCgaaauggaccccauGGAGGAGGGUgagGUAGAc-- -3'
miRNA:   3'- -UUUGACG--------------UCUUUUCCCGa--CGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 94952 0.67 0.995817
Target:  5'- -cGCUGCgguAGAGGGGGGUgUGCAGccAGg -3'
miRNA:   3'- uuUGACG---UCUUUUCCCG-ACGUCuaUC- -5'
28757 3' -49.1 NC_006146.1 + 168246 0.67 0.995087
Target:  5'- --cCUGCAGggG-GGGCcgGCGGGg-- -3'
miRNA:   3'- uuuGACGUCuuUuCCCGa-CGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 167314 0.67 0.995087
Target:  5'- --cCUGCAGggG-GGGCcgGCGGGg-- -3'
miRNA:   3'- uuuGACGUCuuUuCCCGa-CGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 169178 0.67 0.995087
Target:  5'- --cCUGCAGggG-GGGCcgGCGGGg-- -3'
miRNA:   3'- uuuGACGUCuuUuCCCGa-CGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 132075 0.67 0.994257
Target:  5'- uGAGCUGCcccAGGcucAGGGccuGGCUGCAGAUGu -3'
miRNA:   3'- -UUUGACG---UCU---UUUC---CCGACGUCUAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.