miRNA display CGI


Results 101 - 120 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 159975 0.67 0.877979
Target:  5'- gUGGCGcgcaggaGCCC-GCAGUugGggUCUGGCCu -3'
miRNA:   3'- gACCGC-------CGGGaUGUCG--UuuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 78586 0.67 0.878692
Target:  5'- -aGGCcgGGCCCgccccccaGCAGCAGccccagGCCgGGCCc -3'
miRNA:   3'- gaCCG--CCGGGa-------UGUCGUU------UGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 78646 0.67 0.878692
Target:  5'- -aGGCcgGGCCCgccccccaGCAGCAGccacagGCCgGGCCc -3'
miRNA:   3'- gaCCG--CCGGGa-------UGUCGUU------UGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 78706 0.67 0.878692
Target:  5'- -aGGCcgGGCCCgccccccaGCAGCAGccccagGCCgGGCCc -3'
miRNA:   3'- gaCCG--CCGGGa-------UGUCGUU------UGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 78854 0.67 0.878692
Target:  5'- -aGGCcgGGCCCgccccccaGCAGCAGccccagGCCgGGCCc -3'
miRNA:   3'- gaCCG--CCGGGa-------UGUCGUU------UGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 97252 0.67 0.878692
Target:  5'- -aGaCGaGCUCUACcggAGCAGucGCCUGGCCa -3'
miRNA:   3'- gaCcGC-CGGGAUG---UCGUU--UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 137771 0.67 0.878692
Target:  5'- gCUGGUccGGUCCg--GGUggGCCUGGUCc -3'
miRNA:   3'- -GACCG--CCGGGaugUCGuuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 146527 0.67 0.878692
Target:  5'- -aGGCGccgcGCCCUGgAGCuggcCCUGcGCCa -3'
miRNA:   3'- gaCCGC----CGGGAUgUCGuuu-GGAU-CGG- -5'
28758 3' -56.1 NC_006146.1 + 141640 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5'
28758 3' -56.1 NC_006146.1 + 56735 0.67 0.878692
Target:  5'- aUGGUGaCCCUGCugcccagggccAGCAugcGCCUGGUCc -3'
miRNA:   3'- gACCGCcGGGAUG-----------UCGUu--UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 123693 0.67 0.878692
Target:  5'- gUGGCGGag--GCGGCcagGGGCCUGGCg -3'
miRNA:   3'- gACCGCCgggaUGUCG---UUUGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 124477 0.67 0.878692
Target:  5'- cCUGGgGGCCCccucguucUAC-GCGggacucGGCCUGGUCu -3'
miRNA:   3'- -GACCgCCGGG--------AUGuCGU------UUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 14215 0.67 0.878692
Target:  5'- -cGGUGGCgC-GCAacGCGGGCCUucuGGCCg -3'
miRNA:   3'- gaCCGCCGgGaUGU--CGUUUGGA---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 42050 0.67 0.878692
Target:  5'- --cGUGGCCCUuccuGU--GCCUGGCCg -3'
miRNA:   3'- gacCGCCGGGAugu-CGuuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 123374 0.67 0.885698
Target:  5'- gCUGGCcgggGGCCCc---GC-AACCUGGCUg -3'
miRNA:   3'- -GACCG----CCGGGauguCGuUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 129643 0.67 0.885698
Target:  5'- -gGGCGcgugcuccGCCCgggaAUGGCGAgagcgcuuucGCCUGGCCa -3'
miRNA:   3'- gaCCGC--------CGGGa---UGUCGUU----------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 153951 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5'
28758 3' -56.1 NC_006146.1 + 150873 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5'
28758 3' -56.1 NC_006146.1 + 150686 0.67 0.885698
Target:  5'- -gGaGUGGCCagggggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 157029 0.67 0.885698
Target:  5'- -gGGCGGCU--GCGGgGGACgCUGGCa -3'
miRNA:   3'- gaCCGCCGGgaUGUCgUUUG-GAUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.