miRNA display CGI


Results 101 - 120 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 155061 0.7 0.731454
Target:  5'- cCUGGUGGCgCCcgcCGGCuccAACCUcgGGCCu -3'
miRNA:   3'- -GACCGCCG-GGau-GUCGu--UUGGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 158140 0.7 0.731454
Target:  5'- cCUGGUGGCgCCcgcCGGCuccAACCUcgGGCCu -3'
miRNA:   3'- -GACCGCCG-GGau-GUCGu--UUGGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 4122 0.7 0.741229
Target:  5'- -cGGCGGCCagcgaCUACGcGCGuGACCUGGgCg -3'
miRNA:   3'- gaCCGCCGG-----GAUGU-CGU-UUGGAUCgG- -5'
28758 3' -56.1 NC_006146.1 + 156356 0.7 0.741229
Target:  5'- --aGCGGCCCaGCAGCu--CCagGGCCc -3'
miRNA:   3'- gacCGCCGGGaUGUCGuuuGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 64252 0.7 0.741229
Target:  5'- -aGGaCGGCCCUgaccagccggccGCAGCAGGCgCUgcGGCa -3'
miRNA:   3'- gaCC-GCCGGGA------------UGUCGUUUG-GA--UCGg -5'
28758 3' -56.1 NC_006146.1 + 11451 0.7 0.741229
Target:  5'- gUGGCGGCCCUcaaGgAGUuccccGCCUcgaccaucAGCCa -3'
miRNA:   3'- gACCGCCGGGA---UgUCGuu---UGGA--------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 12784 0.7 0.741229
Target:  5'- cCUGgacGCGGCCCUGCaggGGCGGACgUAcggacggcggcuGCCg -3'
miRNA:   3'- -GAC---CGCCGGGAUG---UCGUUUGgAU------------CGG- -5'
28758 3' -56.1 NC_006146.1 + 78019 0.7 0.741229
Target:  5'- gUGGUGGCCUaGCAGguA-CCUGGgCu -3'
miRNA:   3'- gACCGCCGGGaUGUCguUuGGAUCgG- -5'
28758 3' -56.1 NC_006146.1 + 117878 0.7 0.741229
Target:  5'- -cGGCGGCC--GCGGCcAGCCgcgugaGGCCc -3'
miRNA:   3'- gaCCGCCGGgaUGUCGuUUGGa-----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 14363 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 17441 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 124915 0.69 0.750908
Target:  5'- -aGGCGGgCCUACAcGCGGGgCgaggAGCUg -3'
miRNA:   3'- gaCCGCCgGGAUGU-CGUUUgGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 20519 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23597 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 4981 0.69 0.750908
Target:  5'- cCUGGCGGCCUcACuaacGCGGgguGCCUGuGUCa -3'
miRNA:   3'- -GACCGCCGGGaUGu---CGUU---UGGAU-CGG- -5'
28758 3' -56.1 NC_006146.1 + 26675 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 109314 0.69 0.750908
Target:  5'- --cGCGGCCgCUGCAGCcGGCUcuuccucagcgUGGCCc -3'
miRNA:   3'- gacCGCCGG-GAUGUCGuUUGG-----------AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 43483 0.69 0.757622
Target:  5'- -cGGCGGCCgUugacaccggcuccgGCGGCGgGGCCcAGCCc -3'
miRNA:   3'- gaCCGCCGGgA--------------UGUCGU-UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 46044 0.69 0.760483
Target:  5'- -cGG-GGCCCUccaggggacGCAGCGAguGCCaUAGCUg -3'
miRNA:   3'- gaCCgCCGGGA---------UGUCGUU--UGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 139061 0.69 0.760483
Target:  5'- aCUGGCGGCCaccaUACGGgc--CCUGGUg -3'
miRNA:   3'- -GACCGCCGGg---AUGUCguuuGGAUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.