miRNA display CGI


Results 81 - 100 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 155193 0.7 0.701652
Target:  5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3'
miRNA:   3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 152115 0.7 0.701652
Target:  5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3'
miRNA:   3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 149037 0.7 0.701652
Target:  5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3'
miRNA:   3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 145959 0.7 0.701652
Target:  5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3'
miRNA:   3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 142881 0.7 0.701652
Target:  5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3'
miRNA:   3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 95327 0.7 0.701652
Target:  5'- -cGGCGGCCUcauUACAGgAAuucuccccGCCUgcauGGCCg -3'
miRNA:   3'- gaCCGCCGGG---AUGUCgUU--------UGGA----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 129800 0.7 0.705662
Target:  5'- gUGGaGGCCCUGCAcgccuggcuccccucGCugucCCUGGCCu -3'
miRNA:   3'- gACCgCCGGGAUGU---------------CGuuu-GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 137803 0.7 0.720603
Target:  5'- -cGGCGGCCaccCGGCugccccaGAGCCgcagGGCCg -3'
miRNA:   3'- gaCCGCCGGgauGUCG-------UUUGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 155720 0.7 0.721594
Target:  5'- -aGGCGGCCgcGCAGUcgGCCUucAGCg -3'
miRNA:   3'- gaCCGCCGGgaUGUCGuuUGGA--UCGg -5'
28758 3' -56.1 NC_006146.1 + 102853 0.7 0.721594
Target:  5'- uUGGCaGCCaggGCAGCcgccACCUGGUCg -3'
miRNA:   3'- gACCGcCGGga-UGUCGuu--UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 15337 0.7 0.721594
Target:  5'- cCUGGCGggcGCCCcGC-GCGAGCCcGGCUc -3'
miRNA:   3'- -GACCGC---CGGGaUGuCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 115220 0.7 0.721594
Target:  5'- -cGGCGGCCgUGCccguGCuGGCCUucaacGCCg -3'
miRNA:   3'- gaCCGCCGGgAUGu---CGuUUGGAu----CGG- -5'
28758 3' -56.1 NC_006146.1 + 18968 0.7 0.721594
Target:  5'- --aGCGGCCCcuagagaggGCGGCAgGGCCggAGCCa -3'
miRNA:   3'- gacCGCCGGGa--------UGUCGU-UUGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 158140 0.7 0.731454
Target:  5'- cCUGGUGGCgCCcgcCGGCuccAACCUcgGGCCu -3'
miRNA:   3'- -GACCGCCG-GGau-GUCGu--UUGGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 155061 0.7 0.731454
Target:  5'- cCUGGUGGCgCCcgcCGGCuccAACCUcgGGCCu -3'
miRNA:   3'- -GACCGCCG-GGau-GUCGu--UUGGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 151983 0.7 0.731454
Target:  5'- cCUGGUGGCgCCcgcCGGCuccAACCUcgGGCCu -3'
miRNA:   3'- -GACCGCCG-GGau-GUCGu--UUGGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 148905 0.7 0.731454
Target:  5'- cCUGGUGGCgCCcgcCGGCuccAACCUcgGGCCu -3'
miRNA:   3'- -GACCGCCG-GGau-GUCGu--UUGGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 145827 0.7 0.731454
Target:  5'- cCUGGUGGCgCCcgcCGGCuccAACCUcgGGCCu -3'
miRNA:   3'- -GACCGCCG-GGau-GUCGu--UUGGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 142749 0.7 0.731454
Target:  5'- cCUGGUGGCgCCcgcCGGCuccAACCUcgGGCCu -3'
miRNA:   3'- -GACCGCCG-GGau-GUCGu--UUGGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 127571 0.7 0.731454
Target:  5'- cCUGcUGGCCCUggGCGGCcgAGGCCgcGCCg -3'
miRNA:   3'- -GACcGCCGGGA--UGUCG--UUUGGauCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.