Results 81 - 100 of 349 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28758 | 3' | -56.1 | NC_006146.1 | + | 156356 | 0.7 | 0.741229 |
Target: 5'- --aGCGGCCCaGCAGCu--CCagGGCCc -3' miRNA: 3'- gacCGCCGGGaUGUCGuuuGGa-UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 64252 | 0.7 | 0.741229 |
Target: 5'- -aGGaCGGCCCUgaccagccggccGCAGCAGGCgCUgcGGCa -3' miRNA: 3'- gaCC-GCCGGGA------------UGUCGUUUG-GA--UCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 102853 | 0.7 | 0.721594 |
Target: 5'- uUGGCaGCCaggGCAGCcgccACCUGGUCg -3' miRNA: 3'- gACCGcCGGga-UGUCGuu--UGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 41616 | 0.7 | 0.691589 |
Target: 5'- gCUGGUccgcugGGCCCggGC-GCAGACC-AGCCc -3' miRNA: 3'- -GACCG------CCGGGa-UGuCGUUUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 43483 | 0.69 | 0.757622 |
Target: 5'- -cGGCGGCCgUugacaccggcuccgGCGGCGgGGCCcAGCCc -3' miRNA: 3'- gaCCGCCGGgA--------------UGUCGU-UUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 26675 | 0.69 | 0.750908 |
Target: 5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3' miRNA: 3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 14363 | 0.69 | 0.750908 |
Target: 5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3' miRNA: 3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 46722 | 0.69 | 0.760483 |
Target: 5'- -cGGCGGCuCCga-GGCGGGCggaggccacgCUGGCCa -3' miRNA: 3'- gaCCGCCG-GGaugUCGUUUG----------GAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 147416 | 0.69 | 0.788489 |
Target: 5'- -aGaGCGaGCCCacCAGCccguACCUGGCCa -3' miRNA: 3'- gaC-CGC-CGGGauGUCGuu--UGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 2474 | 0.69 | 0.779283 |
Target: 5'- uUGGCGGUguggCCggcgGgGGCAGGCagCUGGCCg -3' miRNA: 3'- gACCGCCG----GGa---UgUCGUUUG--GAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 46044 | 0.69 | 0.760483 |
Target: 5'- -cGG-GGCCCUccaggggacGCAGCGAguGCCaUAGCUg -3' miRNA: 3'- gaCCgCCGGGA---------UGUCGUU--UGG-AUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 4981 | 0.69 | 0.750908 |
Target: 5'- cCUGGCGGCCUcACuaacGCGGgguGCCUGuGUCa -3' miRNA: 3'- -GACCGCCGGGaUGu---CGUU---UGGAU-CGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 129942 | 0.71 | 0.681476 |
Target: 5'- -cGGCGG-UCUACGGCAcgGACCUGGg- -3' miRNA: 3'- gaCCGCCgGGAUGUCGU--UUGGAUCgg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 157491 | 0.78 | 0.313483 |
Target: 5'- -gGGCGGgCCUu--GCAGACCUGGCUg -3' miRNA: 3'- gaCCGCCgGGAuguCGUUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 78796 | 0.68 | 0.806472 |
Target: 5'- -aGGCcgGGCCCgccccccaGCAGCAGccccagGCCgGGCCg -3' miRNA: 3'- gaCCG--CCGGGa-------UGUCGUU------UGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 62018 | 0.68 | 0.832242 |
Target: 5'- gCUGGCcgcggcgcucGGCCuCUGCcGCAuuCC-AGCCg -3' miRNA: 3'- -GACCG----------CCGG-GAUGuCGUuuGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 85650 | 0.68 | 0.823824 |
Target: 5'- gCUGGuUGGCCC-ACGGgGAcCCUGGUg -3' miRNA: 3'- -GACC-GCCGGGaUGUCgUUuGGAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 56802 | 0.68 | 0.805587 |
Target: 5'- -cGGCGGCCgUcUGGCGGGCggggcuuCUGGCCc -3' miRNA: 3'- gaCCGCCGGgAuGUCGUUUG-------GAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 56846 | 0.69 | 0.788489 |
Target: 5'- uCUGGCGGCggggGCGGCAGcUUUGGCUg -3' miRNA: 3'- -GACCGCCGgga-UGUCGUUuGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 47265 | 0.69 | 0.788489 |
Target: 5'- cCUGGCccgggugacgaGGUCCUGCAGaacguCCUgcAGCCg -3' miRNA: 3'- -GACCG-----------CCGGGAUGUCguuu-GGA--UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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