miRNA display CGI


Results 81 - 100 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 156356 0.7 0.741229
Target:  5'- --aGCGGCCCaGCAGCu--CCagGGCCc -3'
miRNA:   3'- gacCGCCGGGaUGUCGuuuGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 64252 0.7 0.741229
Target:  5'- -aGGaCGGCCCUgaccagccggccGCAGCAGGCgCUgcGGCa -3'
miRNA:   3'- gaCC-GCCGGGA------------UGUCGUUUG-GA--UCGg -5'
28758 3' -56.1 NC_006146.1 + 102853 0.7 0.721594
Target:  5'- uUGGCaGCCaggGCAGCcgccACCUGGUCg -3'
miRNA:   3'- gACCGcCGGga-UGUCGuu--UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 41616 0.7 0.691589
Target:  5'- gCUGGUccgcugGGCCCggGC-GCAGACC-AGCCc -3'
miRNA:   3'- -GACCG------CCGGGa-UGuCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 43483 0.69 0.757622
Target:  5'- -cGGCGGCCgUugacaccggcuccgGCGGCGgGGCCcAGCCc -3'
miRNA:   3'- gaCCGCCGGgA--------------UGUCGU-UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 26675 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 14363 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 46722 0.69 0.760483
Target:  5'- -cGGCGGCuCCga-GGCGGGCggaggccacgCUGGCCa -3'
miRNA:   3'- gaCCGCCG-GGaugUCGUUUG----------GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 147416 0.69 0.788489
Target:  5'- -aGaGCGaGCCCacCAGCccguACCUGGCCa -3'
miRNA:   3'- gaC-CGC-CGGGauGUCGuu--UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 2474 0.69 0.779283
Target:  5'- uUGGCGGUguggCCggcgGgGGCAGGCagCUGGCCg -3'
miRNA:   3'- gACCGCCG----GGa---UgUCGUUUG--GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 46044 0.69 0.760483
Target:  5'- -cGG-GGCCCUccaggggacGCAGCGAguGCCaUAGCUg -3'
miRNA:   3'- gaCCgCCGGGA---------UGUCGUU--UGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 4981 0.69 0.750908
Target:  5'- cCUGGCGGCCUcACuaacGCGGgguGCCUGuGUCa -3'
miRNA:   3'- -GACCGCCGGGaUGu---CGUU---UGGAU-CGG- -5'
28758 3' -56.1 NC_006146.1 + 129942 0.71 0.681476
Target:  5'- -cGGCGG-UCUACGGCAcgGACCUGGg- -3'
miRNA:   3'- gaCCGCCgGGAUGUCGU--UUGGAUCgg -5'
28758 3' -56.1 NC_006146.1 + 157491 0.78 0.313483
Target:  5'- -gGGCGGgCCUu--GCAGACCUGGCUg -3'
miRNA:   3'- gaCCGCCgGGAuguCGUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 78796 0.68 0.806472
Target:  5'- -aGGCcgGGCCCgccccccaGCAGCAGccccagGCCgGGCCg -3'
miRNA:   3'- gaCCG--CCGGGa-------UGUCGUU------UGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 62018 0.68 0.832242
Target:  5'- gCUGGCcgcggcgcucGGCCuCUGCcGCAuuCC-AGCCg -3'
miRNA:   3'- -GACCG----------CCGG-GAUGuCGUuuGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 85650 0.68 0.823824
Target:  5'- gCUGGuUGGCCC-ACGGgGAcCCUGGUg -3'
miRNA:   3'- -GACC-GCCGGGaUGUCgUUuGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 56802 0.68 0.805587
Target:  5'- -cGGCGGCCgUcUGGCGGGCggggcuuCUGGCCc -3'
miRNA:   3'- gaCCGCCGGgAuGUCGUUUG-------GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 56846 0.69 0.788489
Target:  5'- uCUGGCGGCggggGCGGCAGcUUUGGCUg -3'
miRNA:   3'- -GACCGCCGgga-UGUCGUUuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 47265 0.69 0.788489
Target:  5'- cCUGGCccgggugacgaGGUCCUGCAGaacguCCUgcAGCCg -3'
miRNA:   3'- -GACCG-----------CCGGGAUGUCguuu-GGA--UCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.