miRNA display CGI


Results 61 - 80 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 26675 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 55767 0.72 0.609006
Target:  5'- -cGGCGGgCCagggGCAGCGAggccaccACgCUGGCCa -3'
miRNA:   3'- gaCCGCCgGGa---UGUCGUU-------UG-GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 68019 0.7 0.691589
Target:  5'- cCUGGCGuccCCCUGCGGCugcuuCUUGGCg -3'
miRNA:   3'- -GACCGCc--GGGAUGUCGuuu--GGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 127386 0.7 0.701652
Target:  5'- aUGGUGGCC----GGC-AGCCUGGCCc -3'
miRNA:   3'- gACCGCCGGgaugUCGuUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 102853 0.7 0.721594
Target:  5'- uUGGCaGCCaggGCAGCcgccACCUGGUCg -3'
miRNA:   3'- gACCGcCGGga-UGUCGuu--UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 77145 0.73 0.529444
Target:  5'- aUGGUGuCCCcGCAGaGAACCUGGCCc -3'
miRNA:   3'- gACCGCcGGGaUGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 157357 0.71 0.661138
Target:  5'- -cGGCgcccGGCgCCUGCAGCAGguuccuguccacGCCUcGGCCc -3'
miRNA:   3'- gaCCG----CCG-GGAUGUCGUU------------UGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 20709 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 26865 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 13862 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 33082 0.76 0.383129
Target:  5'- uUGGCucGGCCCUGCGGCucuggggcAGCCgggUGGCCg -3'
miRNA:   3'- gACCG--CCGGGAUGUCGu-------UUGG---AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 54041 0.76 0.391476
Target:  5'- -gGGCGGCCauguCGGCGGuggucagggcccACCUGGCCg -3'
miRNA:   3'- gaCCGCCGGgau-GUCGUU------------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 46722 0.69 0.760483
Target:  5'- -cGGCGGCuCCga-GGCGGGCggaggccacgCUGGCCa -3'
miRNA:   3'- gaCCGCCG-GGaugUCGUUUG----------GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 44767 0.68 0.806472
Target:  5'- -cGG-GGCCCggcggGCGGgGAACCcaGGCCg -3'
miRNA:   3'- gaCCgCCGGGa----UGUCgUUUGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 56193 0.68 0.832242
Target:  5'- -cGGCcgccagGGCCCgggucucGCGGaCGAGCCgcgAGCCg -3'
miRNA:   3'- gaCCG------CCGGGa------UGUC-GUUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 56374 0.68 0.840479
Target:  5'- gUGGCGGagcaCCgccGCcgGGUAAGCgUGGCCg -3'
miRNA:   3'- gACCGCCg---GGa--UG--UCGUUUGgAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 80045 0.68 0.806472
Target:  5'- aUGGCGGCCagACAGCGGu----GCCg -3'
miRNA:   3'- gACCGCCGGgaUGUCGUUuggauCGG- -5'
28758 3' -56.1 NC_006146.1 + 23597 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 160365 0.69 0.784823
Target:  5'- aCUGGCGucucagcGCCCUugGCAggccgcccagucucGCAAACCagAGCCu -3'
miRNA:   3'- -GACCGC-------CGGGA--UGU--------------CGUUUGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 47265 0.69 0.788489
Target:  5'- cCUGGCccgggugacgaGGUCCUGCAGaacguCCUgcAGCCg -3'
miRNA:   3'- -GACCG-----------CCGGGAUGUCguuu-GGA--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.