miRNA display CGI


Results 61 - 80 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 33438 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33531 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33624 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33717 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33810 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33903 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33995 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 34088 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 34181 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 34274 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 34367 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 34460 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 34553 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 34646 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 34739 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 34832 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 35017 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 35110 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 35203 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 35296 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.