miRNA display CGI


Results 61 - 80 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 20119 0.66 0.892479
Target:  5'- -cGGUGGCCC---GGCAccuGCUgggGGCCa -3'
miRNA:   3'- gaCCGCCGGGaugUCGUu--UGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136558 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136651 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 131066 0.66 0.899033
Target:  5'- -cGcCGGCCCacugUGCGGCcgAGGCCgccgGGCCg -3'
miRNA:   3'- gaCcGCCGGG----AUGUCG--UUUGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 135164 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 135814 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136000 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 135257 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 33284 0.66 0.899033
Target:  5'- -gGGUGGCCCgGCugGGCAccGCUgcGCCg -3'
miRNA:   3'- gaCCGCCGGGaUG--UCGUu-UGGauCGG- -5'
28758 3' -56.1 NC_006146.1 + 13391 0.66 0.892479
Target:  5'- uCUGcGCGGCC--ACGGacuGCCUcAGCCa -3'
miRNA:   3'- -GAC-CGCCGGgaUGUCguuUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23448 0.66 0.892479
Target:  5'- -cGGCuGCCCgucuCGGCcuacgAGGCCcUGGCCg -3'
miRNA:   3'- gaCCGcCGGGau--GUCG-----UUUGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 136465 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 43687 0.66 0.892479
Target:  5'- -aGGCccuccgagaaGGCCaCUACGGCGuccagguCCUGGCg -3'
miRNA:   3'- gaCCG----------CCGG-GAUGUCGUuu-----GGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 40082 0.66 0.892479
Target:  5'- -cGGCGGagggCCUGCAGCGcGugCUgcAGCUc -3'
miRNA:   3'- gaCCGCCg---GGAUGUCGU-UugGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 121773 0.66 0.897091
Target:  5'- cCUGGUGGCUUUGCAGaauuucgcuacucaCAGcACCUugagggagacGGCCg -3'
miRNA:   3'- -GACCGCCGGGAUGUC--------------GUU-UGGA----------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23779 0.66 0.898388
Target:  5'- aUGGCGGCCugcgcguCUGgGGCccGCUgAGCCc -3'
miRNA:   3'- gACCGCCGG-------GAUgUCGuuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 31263 0.66 0.899033
Target:  5'- -aGGUGuuaGCCCcACAGaaguGACUUGGCCa -3'
miRNA:   3'- gaCCGC---CGGGaUGUCgu--UUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 127625 0.66 0.899033
Target:  5'- -gGGCGGCaCCgcCGGCccgcuGCCUcuuguccaGGCCg -3'
miRNA:   3'- gaCCGCCG-GGauGUCGuu---UGGA--------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 132361 0.67 0.856378
Target:  5'- aCUGGacggGGUCCUgcgucuccACGGCcuAAACCUGGUCc -3'
miRNA:   3'- -GACCg---CCGGGA--------UGUCG--UUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 92279 0.67 0.856378
Target:  5'- cCUGG-GGCUgCUGCuggggGGCGGGCCcGGCCu -3'
miRNA:   3'- -GACCgCCGG-GAUG-----UCGUUUGGaUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.