Results 61 - 80 of 349 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28758 | 3' | -56.1 | NC_006146.1 | + | 26173 | 0.71 | 0.671323 |
Target: 5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3' miRNA: 3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 23787 | 0.71 | 0.671323 |
Target: 5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3' miRNA: 3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 20709 | 0.71 | 0.671323 |
Target: 5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3' miRNA: 3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 26865 | 0.71 | 0.671323 |
Target: 5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3' miRNA: 3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 14540 | 0.71 | 0.681476 |
Target: 5'- cCUGGaccgGGCCCUGgAGCu-GCUgGGCCg -3' miRNA: 3'- -GACCg---CCGGGAUgUCGuuUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 61580 | 0.71 | 0.681476 |
Target: 5'- uUGGCucGGCCgUGCAGCAGGCUUcccuGCa -3' miRNA: 3'- gACCG--CCGGgAUGUCGUUUGGAu---CGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 20910 | 0.71 | 0.681476 |
Target: 5'- gUGGaGGCCCUGagucCGGCcGACCUgcaGGCCc -3' miRNA: 3'- gACCgCCGGGAU----GUCGuUUGGA---UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 129942 | 0.71 | 0.681476 |
Target: 5'- -cGGCGG-UCUACGGCAcgGACCUGGg- -3' miRNA: 3'- gaCCGCCgGGAUGUCGU--UUGGAUCgg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 53342 | 0.7 | 0.691589 |
Target: 5'- -cGGCGGCCgCgggGCGGCGugagguCUUGGCUg -3' miRNA: 3'- gaCCGCCGG-Ga--UGUCGUuu----GGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 68019 | 0.7 | 0.691589 |
Target: 5'- cCUGGCGuccCCCUGCGGCugcuuCUUGGCg -3' miRNA: 3'- -GACCGCc--GGGAUGUCGuuu--GGAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 18386 | 0.7 | 0.691589 |
Target: 5'- cCUGGUGGCCggGguGguGAuCCUAGUCa -3' miRNA: 3'- -GACCGCCGGgaUguCguUU-GGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 138752 | 0.7 | 0.691589 |
Target: 5'- gCUGaGCGGCCUgccACGGC---CCUGGCUa -3' miRNA: 3'- -GAC-CGCCGGGa--UGUCGuuuGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 41616 | 0.7 | 0.691589 |
Target: 5'- gCUGGUccgcugGGCCCggGC-GCAGACC-AGCCc -3' miRNA: 3'- -GACCG------CCGGGa-UGuCGUUUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 114573 | 0.7 | 0.700648 |
Target: 5'- -gGGCGGCCUccuucucGCGGCGcagcuacGGCCUGGgCCa -3' miRNA: 3'- gaCCGCCGGGa------UGUCGU-------UUGGAUC-GG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 145959 | 0.7 | 0.701652 |
Target: 5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3' miRNA: 3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 149037 | 0.7 | 0.701652 |
Target: 5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3' miRNA: 3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 152115 | 0.7 | 0.701652 |
Target: 5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3' miRNA: 3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 158272 | 0.7 | 0.701652 |
Target: 5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3' miRNA: 3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 71803 | 0.7 | 0.701652 |
Target: 5'- -gGGCaGGCgCgggACGuGCGGACCUGGCUg -3' miRNA: 3'- gaCCG-CCGgGa--UGU-CGUUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 95327 | 0.7 | 0.701652 |
Target: 5'- -cGGCGGCCUcauUACAGgAAuucuccccGCCUgcauGGCCg -3' miRNA: 3'- gaCCGCCGGG---AUGUCgUU--------UGGA----UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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