miRNA display CGI


Results 61 - 80 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 26173 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23787 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 20709 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 26865 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 14540 0.71 0.681476
Target:  5'- cCUGGaccgGGCCCUGgAGCu-GCUgGGCCg -3'
miRNA:   3'- -GACCg---CCGGGAUgUCGuuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 61580 0.71 0.681476
Target:  5'- uUGGCucGGCCgUGCAGCAGGCUUcccuGCa -3'
miRNA:   3'- gACCG--CCGGgAUGUCGUUUGGAu---CGg -5'
28758 3' -56.1 NC_006146.1 + 20910 0.71 0.681476
Target:  5'- gUGGaGGCCCUGagucCGGCcGACCUgcaGGCCc -3'
miRNA:   3'- gACCgCCGGGAU----GUCGuUUGGA---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 129942 0.71 0.681476
Target:  5'- -cGGCGG-UCUACGGCAcgGACCUGGg- -3'
miRNA:   3'- gaCCGCCgGGAUGUCGU--UUGGAUCgg -5'
28758 3' -56.1 NC_006146.1 + 53342 0.7 0.691589
Target:  5'- -cGGCGGCCgCgggGCGGCGugagguCUUGGCUg -3'
miRNA:   3'- gaCCGCCGG-Ga--UGUCGUuu----GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 68019 0.7 0.691589
Target:  5'- cCUGGCGuccCCCUGCGGCugcuuCUUGGCg -3'
miRNA:   3'- -GACCGCc--GGGAUGUCGuuu--GGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 18386 0.7 0.691589
Target:  5'- cCUGGUGGCCggGguGguGAuCCUAGUCa -3'
miRNA:   3'- -GACCGCCGGgaUguCguUU-GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 138752 0.7 0.691589
Target:  5'- gCUGaGCGGCCUgccACGGC---CCUGGCUa -3'
miRNA:   3'- -GAC-CGCCGGGa--UGUCGuuuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 41616 0.7 0.691589
Target:  5'- gCUGGUccgcugGGCCCggGC-GCAGACC-AGCCc -3'
miRNA:   3'- -GACCG------CCGGGa-UGuCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 114573 0.7 0.700648
Target:  5'- -gGGCGGCCUccuucucGCGGCGcagcuacGGCCUGGgCCa -3'
miRNA:   3'- gaCCGCCGGGa------UGUCGU-------UUGGAUC-GG- -5'
28758 3' -56.1 NC_006146.1 + 145959 0.7 0.701652
Target:  5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3'
miRNA:   3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 149037 0.7 0.701652
Target:  5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3'
miRNA:   3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 152115 0.7 0.701652
Target:  5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3'
miRNA:   3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 158272 0.7 0.701652
Target:  5'- cCUGGcCGGgUCUA-AGguGGCCUGGCCu -3'
miRNA:   3'- -GACC-GCCgGGAUgUCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 71803 0.7 0.701652
Target:  5'- -gGGCaGGCgCgggACGuGCGGACCUGGCUg -3'
miRNA:   3'- gaCCG-CCGgGa--UGU-CGUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 95327 0.7 0.701652
Target:  5'- -cGGCGGCCUcauUACAGgAAuucuccccGCCUgcauGGCCg -3'
miRNA:   3'- gaCCGCCGGG---AUGUCgUU--------UGGA----UCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.