miRNA display CGI


Results 41 - 60 of 349 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 146686 0.71 0.646841
Target:  5'- -gGGCGGCCCcgGCcccaacagaccucGCAGGCCcAGCCc -3'
miRNA:   3'- gaCCGCCGGGa-UGu------------CGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 58982 0.71 0.65093
Target:  5'- -cGGUGGCCac-CuGC-AACCUGGCCa -3'
miRNA:   3'- gaCCGCCGGgauGuCGuUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 43261 0.71 0.65093
Target:  5'- -aGcGCGGCCUggacaagagGCAGCGGGCCggcgguGCCg -3'
miRNA:   3'- gaC-CGCCGGGa--------UGUCGUUUGGau----CGG- -5'
28758 3' -56.1 NC_006146.1 + 127067 0.71 0.661138
Target:  5'- gCUGGCGGC---GCGGgAAGCCgaaagGGCCa -3'
miRNA:   3'- -GACCGCCGggaUGUCgUUUGGa----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 54002 0.71 0.661138
Target:  5'- aUGGgGaacugauaGCCCUGgAGCAGgcacugcugcGCCUGGCCg -3'
miRNA:   3'- gACCgC--------CGGGAUgUCGUU----------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 156216 0.71 0.661138
Target:  5'- -aGGUGGCCUgGCAacGCGAACCccccugGGCCc -3'
miRNA:   3'- gaCCGCCGGGaUGU--CGUUUGGa-----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 146982 0.71 0.661138
Target:  5'- -aGGUGGCCUgGCAacGCGAACCccccugGGCCc -3'
miRNA:   3'- gaCCGCCGGGaUGU--CGUUUGGa-----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 157357 0.71 0.661138
Target:  5'- -cGGCgcccGGCgCCUGCAGCAGguuccuguccacGCCUcGGCCc -3'
miRNA:   3'- gaCCG----CCG-GGAUGUCGUU------------UGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 143904 0.71 0.661138
Target:  5'- -aGGUGGCCUgGCAacGCGAACCccccugGGCCc -3'
miRNA:   3'- gaCCGCCGGGaUGU--CGUUUGGa-----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 153138 0.71 0.661138
Target:  5'- -aGGUGGCCUgGCAacGCGAACCccccugGGCCc -3'
miRNA:   3'- gaCCGCCGGGaUGU--CGUUUGGa-----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 150060 0.71 0.661138
Target:  5'- -aGGUGGCCUgGCAacGCGAACCccccugGGCCc -3'
miRNA:   3'- gaCCGCCGGGaUGU--CGUUUGGa-----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 41054 0.71 0.670306
Target:  5'- -cGGCGGCCCUGgGG---GCCUcgggguggagggaGGCCa -3'
miRNA:   3'- gaCCGCCGGGAUgUCguuUGGA-------------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23095 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 26173 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 20017 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 29251 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 13862 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23834 0.71 0.671323
Target:  5'- cCUGGCcuuuCCCUAC-GCcgGGACCUGGCCc -3'
miRNA:   3'- -GACCGcc--GGGAUGuCG--UUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 104342 0.71 0.671323
Target:  5'- gCUGcCGGCCCU-UGGCGGACUuUAGCCu -3'
miRNA:   3'- -GACcGCCGGGAuGUCGUUUGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 14553 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.