Results 21 - 40 of 349 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28758 | 3' | -56.1 | NC_006146.1 | + | 77145 | 0.73 | 0.529444 |
Target: 5'- aUGGUGuCCCcGCAGaGAACCUGGCCc -3' miRNA: 3'- gACCGCcGGGaUGUCgUUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 123283 | 0.73 | 0.539342 |
Target: 5'- gCUcGUGGCCCUAuCGGCGAucCCUGGCg -3' miRNA: 3'- -GAcCGCCGGGAU-GUCGUUu-GGAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 71581 | 0.73 | 0.549302 |
Target: 5'- -aGaGCGGCUUccGCAGCAggUCUGGCCc -3' miRNA: 3'- gaC-CGCCGGGa-UGUCGUuuGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 92088 | 0.73 | 0.549302 |
Target: 5'- -gGGCGGCCCggccugggGCugcugcuggggGGCGGGCCcGGCCu -3' miRNA: 3'- gaCCGCCGGGa-------UG-----------UCGUUUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 125096 | 0.73 | 0.549302 |
Target: 5'- -aGGCGGCCgugGCGGCG-GCCUuccucGGCCg -3' miRNA: 3'- gaCCGCCGGga-UGUCGUuUGGA-----UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 83644 | 0.72 | 0.578483 |
Target: 5'- -cGGgGGCUCUGCGGgcCAGACCUccaccuuuggguuGGCCa -3' miRNA: 3'- gaCCgCCGGGAUGUC--GUUUGGA-------------UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 167008 | 0.72 | 0.579496 |
Target: 5'- uUGGgGGCCUcguCGGUggGCCUcGCCg -3' miRNA: 3'- gACCgCCGGGau-GUCGuuUGGAuCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 87218 | 0.72 | 0.599824 |
Target: 5'- gUGGCGGCC--GCAGCcaucACCUggguGGCCa -3' miRNA: 3'- gACCGCCGGgaUGUCGuu--UGGA----UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 39999 | 0.72 | 0.599824 |
Target: 5'- -gGGUGGCCCgGCAGCcuuuGACC-GGUCa -3' miRNA: 3'- gaCCGCCGGGaUGUCGu---UUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 16940 | 0.72 | 0.599824 |
Target: 5'- -cGGCGGCCCggugugcCAGCGucccCCcAGCCg -3' miRNA: 3'- gaCCGCCGGGau-----GUCGUuu--GGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 55767 | 0.72 | 0.609006 |
Target: 5'- -cGGCGGgCCagggGCAGCGAggccaccACgCUGGCCa -3' miRNA: 3'- gaCCGCCgGGa---UGUCGUU-------UG-GAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 15428 | 0.72 | 0.610027 |
Target: 5'- -gGGCuGGCCCggcUGCAGUccuGCCUGGCg -3' miRNA: 3'- gaCCG-CCGGG---AUGUCGuu-UGGAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 39814 | 0.72 | 0.610027 |
Target: 5'- -cGGCGGCCgUugACGGCccggcGGCCUcGGCCg -3' miRNA: 3'- gaCCGCCGGgA--UGUCGu----UUGGA-UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 94917 | 0.72 | 0.610027 |
Target: 5'- -gGGCGaGCCCacgcagacgaUGCAGgGGACgUGGCCg -3' miRNA: 3'- gaCCGC-CGGG----------AUGUCgUUUGgAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 115132 | 0.72 | 0.610027 |
Target: 5'- gUGGUGGCCUcGCuGCc--CCUGGCCc -3' miRNA: 3'- gACCGCCGGGaUGuCGuuuGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 115362 | 0.72 | 0.620247 |
Target: 5'- cCUGGcCGGCgUgGCGGCGGAgcuggaggcCCUGGCCg -3' miRNA: 3'- -GACC-GCCGgGaUGUCGUUU---------GGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 40441 | 0.72 | 0.630476 |
Target: 5'- --aGCGGCCCcguaggcgggUGCGGCAAugGCCUGGUg -3' miRNA: 3'- gacCGCCGGG----------AUGUCGUU--UGGAUCGg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 91996 | 0.72 | 0.630476 |
Target: 5'- aCUGGCgGGCCCggccugggGCugcugcuggggGGCGGGCCcGGCCu -3' miRNA: 3'- -GACCG-CCGGGa-------UG-----------UCGUUUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 124278 | 0.71 | 0.640706 |
Target: 5'- -cGGCccccaaGGCCCUgAUGGaAGACCUGGCCg -3' miRNA: 3'- gaCCG------CCGGGA-UGUCgUUUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 56693 | 0.71 | 0.640706 |
Target: 5'- -gGGCuGGCCCUGCuGgAcAACCUgAGCCu -3' miRNA: 3'- gaCCG-CCGGGAUGuCgU-UUGGA-UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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