miRNA display CGI


Results 21 - 40 of 349 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 77145 0.73 0.529444
Target:  5'- aUGGUGuCCCcGCAGaGAACCUGGCCc -3'
miRNA:   3'- gACCGCcGGGaUGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 123283 0.73 0.539342
Target:  5'- gCUcGUGGCCCUAuCGGCGAucCCUGGCg -3'
miRNA:   3'- -GAcCGCCGGGAU-GUCGUUu-GGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 125096 0.73 0.549302
Target:  5'- -aGGCGGCCgugGCGGCG-GCCUuccucGGCCg -3'
miRNA:   3'- gaCCGCCGGga-UGUCGUuUGGA-----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 71581 0.73 0.549302
Target:  5'- -aGaGCGGCUUccGCAGCAggUCUGGCCc -3'
miRNA:   3'- gaC-CGCCGGGa-UGUCGUuuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 92088 0.73 0.549302
Target:  5'- -gGGCGGCCCggccugggGCugcugcuggggGGCGGGCCcGGCCu -3'
miRNA:   3'- gaCCGCCGGGa-------UG-----------UCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 83644 0.72 0.578483
Target:  5'- -cGGgGGCUCUGCGGgcCAGACCUccaccuuuggguuGGCCa -3'
miRNA:   3'- gaCCgCCGGGAUGUC--GUUUGGA-------------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 167008 0.72 0.579496
Target:  5'- uUGGgGGCCUcguCGGUggGCCUcGCCg -3'
miRNA:   3'- gACCgCCGGGau-GUCGuuUGGAuCGG- -5'
28758 3' -56.1 NC_006146.1 + 16940 0.72 0.599824
Target:  5'- -cGGCGGCCCggugugcCAGCGucccCCcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuu--GGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 39999 0.72 0.599824
Target:  5'- -gGGUGGCCCgGCAGCcuuuGACC-GGUCa -3'
miRNA:   3'- gaCCGCCGGGaUGUCGu---UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 87218 0.72 0.599824
Target:  5'- gUGGCGGCC--GCAGCcaucACCUggguGGCCa -3'
miRNA:   3'- gACCGCCGGgaUGUCGuu--UGGA----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 55767 0.72 0.609006
Target:  5'- -cGGCGGgCCagggGCAGCGAggccaccACgCUGGCCa -3'
miRNA:   3'- gaCCGCCgGGa---UGUCGUU-------UG-GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 115132 0.72 0.610027
Target:  5'- gUGGUGGCCUcGCuGCc--CCUGGCCc -3'
miRNA:   3'- gACCGCCGGGaUGuCGuuuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 39814 0.72 0.610027
Target:  5'- -cGGCGGCCgUugACGGCccggcGGCCUcGGCCg -3'
miRNA:   3'- gaCCGCCGGgA--UGUCGu----UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 15428 0.72 0.610027
Target:  5'- -gGGCuGGCCCggcUGCAGUccuGCCUGGCg -3'
miRNA:   3'- gaCCG-CCGGG---AUGUCGuu-UGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 94917 0.72 0.610027
Target:  5'- -gGGCGaGCCCacgcagacgaUGCAGgGGACgUGGCCg -3'
miRNA:   3'- gaCCGC-CGGG----------AUGUCgUUUGgAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 115362 0.72 0.620247
Target:  5'- cCUGGcCGGCgUgGCGGCGGAgcuggaggcCCUGGCCg -3'
miRNA:   3'- -GACC-GCCGgGaUGUCGUUU---------GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 91996 0.72 0.630476
Target:  5'- aCUGGCgGGCCCggccugggGCugcugcuggggGGCGGGCCcGGCCu -3'
miRNA:   3'- -GACCG-CCGGGa-------UG-----------UCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 40441 0.72 0.630476
Target:  5'- --aGCGGCCCcguaggcgggUGCGGCAAugGCCUGGUg -3'
miRNA:   3'- gacCGCCGGG----------AUGUCGUU--UGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 56693 0.71 0.640706
Target:  5'- -gGGCuGGCCCUGCuGgAcAACCUgAGCCu -3'
miRNA:   3'- gaCCG-CCGGGAUGuCgU-UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 124278 0.71 0.640706
Target:  5'- -cGGCccccaaGGCCCUgAUGGaAGACCUGGCCg -3'
miRNA:   3'- gaCCG------CCGGGA-UGUCgUUUGGAUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.