miRNA display CGI


Results 21 - 40 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 90054 0.66 0.911443
Target:  5'- -aGGUGGUgCUGgAGgGAGCCUAGg- -3'
miRNA:   3'- gaCCGCCGgGAUgUCgUUUGGAUCgg -5'
28758 3' -56.1 NC_006146.1 + 136093 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136279 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136836 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136929 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 135814 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136372 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136465 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 137022 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136000 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 137115 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136558 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 19911 0.66 0.911443
Target:  5'- cCUGGacagGGCCCggcacaucUACGGCAucAAUCcGGCCu -3'
miRNA:   3'- -GACCg---CCGGG--------AUGUCGU--UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 114816 0.66 0.911443
Target:  5'- gCUGGUGGCCg-ACA-CcuACUUGGCCc -3'
miRNA:   3'- -GACCGCCGGgaUGUcGuuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 162594 0.66 0.911443
Target:  5'- -cGGgGGCCCUaACAGCAcagagagcGACCccgggAGUg -3'
miRNA:   3'- gaCCgCCGGGA-UGUCGU--------UUGGa----UCGg -5'
28758 3' -56.1 NC_006146.1 + 115499 0.66 0.911443
Target:  5'- -cGGCGGgCgaCUACGccGUGAugCUGGCCu -3'
miRNA:   3'- gaCCGCCgG--GAUGU--CGUUugGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 120768 0.66 0.911443
Target:  5'- gCUGGCGGCgCCU-CAuGUc--CCUGGCg -3'
miRNA:   3'- -GACCGCCG-GGAuGU-CGuuuGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 141452 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 147608 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 153763 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.