miRNA display CGI


Results 21 - 40 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 128149 0.66 0.891811
Target:  5'- cCUGuCGGCCCUGCugccgcaGGCGAugC-AGCg -3'
miRNA:   3'- -GACcGCCGGGAUG-------UCGUUugGaUCGg -5'
28758 3' -56.1 NC_006146.1 + 141452 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 112702 0.66 0.917295
Target:  5'- -gGGUcuGGCCC-GCAGCAGGgcgucCCUgaGGCCc -3'
miRNA:   3'- gaCCG--CCGGGaUGUCGUUU-----GGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 19604 0.66 0.917295
Target:  5'- cCUGGCccUCCUACA-CGGcCCUGGCCu -3'
miRNA:   3'- -GACCGccGGGAUGUcGUUuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 16654 0.66 0.917295
Target:  5'- cCUGa-GGCCCacCAGCG-GCCUGGCUa -3'
miRNA:   3'- -GACcgCCGGGauGUCGUuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 54723 0.66 0.917295
Target:  5'- gCUGGUGGgauuugccuuCUCUG-AGCGGACCagGGCCg -3'
miRNA:   3'- -GACCGCC----------GGGAUgUCGUUUGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 46820 0.66 0.91672
Target:  5'- uCUGGCuuacguGGCCCUguccaucaACGGCAAcaaguuucaguacACUggGGCCa -3'
miRNA:   3'- -GACCG------CCGGGA--------UGUCGUU-------------UGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 156841 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 153763 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 147608 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 144530 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 20726 0.66 0.905355
Target:  5'- gCUGGCGGCCU----GCGAGgacCCgcGCCa -3'
miRNA:   3'- -GACCGCCGGGauguCGUUU---GGauCGG- -5'
28758 3' -56.1 NC_006146.1 + 120768 0.66 0.911443
Target:  5'- gCUGGCGGCgCCU-CAuGUc--CCUGGCg -3'
miRNA:   3'- -GACCGCCG-GGAuGU-CGuuuGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 115499 0.66 0.911443
Target:  5'- -cGGCGGgCgaCUACGccGUGAugCUGGCCu -3'
miRNA:   3'- gaCCGCCgG--GAUGU--CGUUugGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 162594 0.66 0.911443
Target:  5'- -cGGgGGCCCUaACAGCAcagagagcGACCccgggAGUg -3'
miRNA:   3'- gaCCgCCGGGA-UGUCGU--------UUGGa----UCGg -5'
28758 3' -56.1 NC_006146.1 + 114816 0.66 0.911443
Target:  5'- gCUGGUGGCCg-ACA-CcuACUUGGCCc -3'
miRNA:   3'- -GACCGCCGGgaUGUcGuuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 19911 0.66 0.911443
Target:  5'- cCUGGacagGGCCCggcacaucUACGGCAucAAUCcGGCCu -3'
miRNA:   3'- -GACCg---CCGGG--------AUGUCGU--UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 167903 0.66 0.905355
Target:  5'- aUGGaaaGGCCC--CAGCAuGACCagguacUGGCCg -3'
miRNA:   3'- gACCg--CCGGGauGUCGU-UUGG------AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 128491 0.66 0.905355
Target:  5'- -aGGgGGCCC-ACGGCGGGCaCguucAGCa -3'
miRNA:   3'- gaCCgCCGGGaUGUCGUUUG-Ga---UCGg -5'
28758 3' -56.1 NC_006146.1 + 66763 0.66 0.905355
Target:  5'- aCUcGCuGCUCUACGGCGucaugAAgCUGGCCg -3'
miRNA:   3'- -GAcCGcCGGGAUGUCGU-----UUgGAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.