miRNA display CGI


Results 21 - 40 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 13862 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 127067 0.71 0.661138
Target:  5'- gCUGGCGGC---GCGGgAAGCCgaaagGGCCa -3'
miRNA:   3'- -GACCGCCGggaUGUCgUUUGGa----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 77145 0.73 0.529444
Target:  5'- aUGGUGuCCCcGCAGaGAACCUGGCCc -3'
miRNA:   3'- gACCGCcGGGaUGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 128065 0.77 0.366793
Target:  5'- cCUGGCGGCCCUcgaGGCccuGAuCCUGGUCu -3'
miRNA:   3'- -GACCGCCGGGAug-UCGu--UU-GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 41616 0.7 0.691589
Target:  5'- gCUGGUccgcugGGCCCggGC-GCAGACC-AGCCc -3'
miRNA:   3'- -GACCG------CCGGGa-UGuCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 14553 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 43261 0.71 0.65093
Target:  5'- -aGcGCGGCCUggacaagagGCAGCGGGCCggcgguGCCg -3'
miRNA:   3'- gaC-CGCCGGGa--------UGUCGUUUGGau----CGG- -5'
28758 3' -56.1 NC_006146.1 + 48094 0.77 0.343203
Target:  5'- -cGGCGGCCg-ACAGCGcGGCCUcGGCCg -3'
miRNA:   3'- gaCCGCCGGgaUGUCGU-UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 29251 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 157491 0.78 0.313483
Target:  5'- -gGGCGGgCCUu--GCAGACCUGGCUg -3'
miRNA:   3'- gaCCGCCgGGAuguCGUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 58982 0.71 0.65093
Target:  5'- -cGGUGGCCac-CuGC-AACCUGGCCa -3'
miRNA:   3'- gaCCGCCGGgauGuCGuUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 20017 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 55767 0.72 0.609006
Target:  5'- -cGGCGGgCCagggGCAGCGAggccaccACgCUGGCCa -3'
miRNA:   3'- gaCCGCCgGGa---UGUCGUU-------UG-GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 83644 0.72 0.578483
Target:  5'- -cGGgGGCUCUGCGGgcCAGACCUccaccuuuggguuGGCCa -3'
miRNA:   3'- gaCCgCCGGGAUGUC--GUUUGGA-------------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 128517 0.75 0.417216
Target:  5'- -gGGUGGCCCUGgGGCGccCCUcGCCc -3'
miRNA:   3'- gaCCGCCGGGAUgUCGUuuGGAuCGG- -5'
28758 3' -56.1 NC_006146.1 + 68844 0.76 0.380648
Target:  5'- -gGGCucaaGGCCCUGCuGGCAAgcaggcuggcgacaGCCUGGCCc -3'
miRNA:   3'- gaCCG----CCGGGAUG-UCGUU--------------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 62100 0.7 0.701652
Target:  5'- gUGGCGGCaggacugcucgCCUcgGCGGgAGACCU-GCCa -3'
miRNA:   3'- gACCGCCG-----------GGA--UGUCgUUUGGAuCGG- -5'
28758 3' -56.1 NC_006146.1 + 53342 0.7 0.691589
Target:  5'- -cGGCGGCCgCgggGCGGCGugagguCUUGGCUg -3'
miRNA:   3'- gaCCGCCGG-Ga--UGUCGUuu----GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 26865 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 17631 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.