miRNA display CGI


Results 21 - 40 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 63423 0.78 0.292499
Target:  5'- gUGGCGGCCCU-CAGCGcGGCCaUGcGCCa -3'
miRNA:   3'- gACCGCCGGGAuGUCGU-UUGG-AU-CGG- -5'
28758 3' -56.1 NC_006146.1 + 23787 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 20709 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 157357 0.71 0.661138
Target:  5'- -cGGCgcccGGCgCCUGCAGCAGguuccuguccacGCCUcGGCCc -3'
miRNA:   3'- gaCCG----CCG-GGAUGUCGUU------------UGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 16940 0.72 0.599824
Target:  5'- -cGGCGGCCCggugugcCAGCGucccCCcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuu--GGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 68019 0.7 0.691589
Target:  5'- cCUGGCGuccCCCUGCGGCugcuuCUUGGCg -3'
miRNA:   3'- -GACCGCc--GGGAUGUCGuuu--GGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 61580 0.71 0.681476
Target:  5'- uUGGCucGGCCgUGCAGCAGGCUUcccuGCa -3'
miRNA:   3'- gACCG--CCGGgAUGUCGUUUGGAu---CGg -5'
28758 3' -56.1 NC_006146.1 + 53155 0.74 0.48486
Target:  5'- gUGGCGGCgaCUGCGGCGguggccggaaggcucGGCCUcGGCCc -3'
miRNA:   3'- gACCGCCGg-GAUGUCGU---------------UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23095 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 13862 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 54041 0.76 0.391476
Target:  5'- -gGGCGGCCauguCGGCGGuggucagggcccACCUGGCCg -3'
miRNA:   3'- gaCCGCCGGgau-GUCGUU------------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33082 0.76 0.383129
Target:  5'- uUGGCucGGCCCUGCGGCucuggggcAGCCgggUGGCCg -3'
miRNA:   3'- gACCG--CCGGGAUGUCGu-------UUGG---AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 128190 0.7 0.701652
Target:  5'- -aGGCGGCCCaggggggcgccGCGGC--GCCgGGCCa -3'
miRNA:   3'- gaCCGCCGGGa----------UGUCGuuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 54910 0.7 0.701652
Target:  5'- uCUGGcCGGCCUUcagggaccgGCAGUAGGCCUcgacgucuGCCc -3'
miRNA:   3'- -GACC-GCCGGGA---------UGUCGUUUGGAu-------CGG- -5'
28758 3' -56.1 NC_006146.1 + 17631 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 94917 0.72 0.610027
Target:  5'- -gGGCGaGCCCacgcagacgaUGCAGgGGACgUGGCCg -3'
miRNA:   3'- gaCCGC-CGGG----------AUGUCgUUUGgAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 39999 0.72 0.599824
Target:  5'- -gGGUGGCCCgGCAGCcuuuGACC-GGUCa -3'
miRNA:   3'- gaCCGCCGGGaUGUCGu---UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 68844 0.76 0.380648
Target:  5'- -gGGCucaaGGCCCUGCuGGCAAgcaggcuggcgacaGCCUGGCCc -3'
miRNA:   3'- gaCCG----CCGGGAUG-UCGUU--------------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 104342 0.71 0.671323
Target:  5'- gCUGcCGGCCCU-UGGCGGACUuUAGCCu -3'
miRNA:   3'- -GACcGCCGGGAuGUCGUUUGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 26173 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.