miRNA display CGI


Results 1 - 20 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 63423 0.78 0.292499
Target:  5'- gUGGCGGCCCU-CAGCGcGGCCaUGcGCCa -3'
miRNA:   3'- gACCGCCGGGAuGUCGU-UUGG-AU-CGG- -5'
28758 3' -56.1 NC_006146.1 + 43261 0.71 0.65093
Target:  5'- -aGcGCGGCCUggacaagagGCAGCGGGCCggcgguGCCg -3'
miRNA:   3'- gaC-CGCCGGGa--------UGUCGUUUGGau----CGG- -5'
28758 3' -56.1 NC_006146.1 + 127067 0.71 0.661138
Target:  5'- gCUGGCGGC---GCGGgAAGCCgaaagGGCCa -3'
miRNA:   3'- -GACCGCCGggaUGUCgUUUGGa----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 160135 0.65 0.920692
Target:  5'- -aGGUGGCCaggggguagaAGUAGAUgUAGCCg -3'
miRNA:   3'- gaCCGCCGGgaug------UCGUUUGgAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 68844 0.76 0.380648
Target:  5'- -gGGCucaaGGCCCUGCuGGCAAgcaggcuggcgacaGCCUGGCCc -3'
miRNA:   3'- gaCCG----CCGGGAUG-UCGUU--------------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33082 0.76 0.383129
Target:  5'- uUGGCucGGCCCUGCGGCucuggggcAGCCgggUGGCCg -3'
miRNA:   3'- gACCG--CCGGGAUGUCGu-------UUGG---AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 128517 0.75 0.417216
Target:  5'- -gGGUGGCCCUGgGGCGccCCUcGCCc -3'
miRNA:   3'- gaCCGCCGGGAUgUCGUuuGGAuCGG- -5'
28758 3' -56.1 NC_006146.1 + 53155 0.74 0.48486
Target:  5'- gUGGCGGCgaCUGCGGCGguggccggaaggcucGGCCUcGGCCc -3'
miRNA:   3'- gACCGCCGg-GAUGUCGU---------------UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 83644 0.72 0.578483
Target:  5'- -cGGgGGCUCUGCGGgcCAGACCUccaccuuuggguuGGCCa -3'
miRNA:   3'- gaCCgCCGGGAUGUC--GUUUGGA-------------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 146686 0.71 0.646841
Target:  5'- -gGGCGGCCCcgGCcccaacagaccucGCAGGCCcAGCCc -3'
miRNA:   3'- gaCCGCCGGGa-UGu------------CGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 39999 0.72 0.599824
Target:  5'- -gGGUGGCCCgGCAGCcuuuGACC-GGUCa -3'
miRNA:   3'- gaCCGCCGGGaUGUCGu---UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 77145 0.73 0.529444
Target:  5'- aUGGUGuCCCcGCAGaGAACCUGGCCc -3'
miRNA:   3'- gACCGCcGGGaUGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 157491 0.78 0.313483
Target:  5'- -gGGCGGgCCUu--GCAGACCUGGCUg -3'
miRNA:   3'- gaCCGCCgGGAuguCGUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 55767 0.72 0.609006
Target:  5'- -cGGCGGgCCagggGCAGCGAggccaccACgCUGGCCa -3'
miRNA:   3'- gaCCGCCgGGa---UGUCGUU-------UG-GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 48094 0.77 0.343203
Target:  5'- -cGGCGGCCg-ACAGCGcGGCCUcGGCCg -3'
miRNA:   3'- gaCCGCCGGgaUGUCGU-UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 158244 0.74 0.500176
Target:  5'- uCUGGUaguGGCCCUugAGCcacucggggGGACuCUGGCCc -3'
miRNA:   3'- -GACCG---CCGGGAugUCG---------UUUG-GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 94917 0.72 0.610027
Target:  5'- -gGGCGaGCCCacgcagacgaUGCAGgGGACgUGGCCg -3'
miRNA:   3'- gaCCGC-CGGG----------AUGUCgUUUGgAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 58982 0.71 0.65093
Target:  5'- -cGGUGGCCac-CuGC-AACCUGGCCa -3'
miRNA:   3'- gaCCGCCGGgauGuCGuUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 128065 0.77 0.366793
Target:  5'- cCUGGCGGCCCUcgaGGCccuGAuCCUGGUCu -3'
miRNA:   3'- -GACCGCCGGGAug-UCGu--UU-GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 54041 0.76 0.391476
Target:  5'- -gGGCGGCCauguCGGCGGuggucagggcccACCUGGCCg -3'
miRNA:   3'- gaCCGCCGGgau-GUCGUU------------UGGAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.