miRNA display CGI


Results 1 - 20 of 349 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 2474 0.69 0.779283
Target:  5'- uUGGCGGUguggCCggcgGgGGCAGGCagCUGGCCg -3'
miRNA:   3'- gACCGCCG----GGa---UgUCGUUUG--GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 4122 0.7 0.741229
Target:  5'- -cGGCGGCCagcgaCUACGcGCGuGACCUGGgCg -3'
miRNA:   3'- gaCCGCCGG-----GAUGU-CGU-UUGGAUCgG- -5'
28758 3' -56.1 NC_006146.1 + 4510 0.67 0.883619
Target:  5'- aCUGGCGGgCCaGCGGgGGgugaccaucucgguGCCggcAGCCg -3'
miRNA:   3'- -GACCGCCgGGaUGUCgUU--------------UGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 4981 0.69 0.750908
Target:  5'- cCUGGCGGCCUcACuaacGCGGgguGCCUGuGUCa -3'
miRNA:   3'- -GACCGCCGGGaUGu---CGUU---UGGAU-CGG- -5'
28758 3' -56.1 NC_006146.1 + 6605 0.69 0.788489
Target:  5'- -cGGCaguGGCCC--CGGCGGACCUcauaaucagcAGCCu -3'
miRNA:   3'- gaCCG---CCGGGauGUCGUUUGGA----------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 9920 0.68 0.823824
Target:  5'- -aGGCGacggaGCCCgcgagcaggaGCAGCugagcgaaAAGCCUGGCCa -3'
miRNA:   3'- gaCCGC-----CGGGa---------UGUCG--------UUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 11451 0.7 0.741229
Target:  5'- gUGGCGGCCCUcaaGgAGUuccccGCCUcgaccaucAGCCa -3'
miRNA:   3'- gACCGCCGGGA---UgUCGuu---UGGA--------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 11649 0.75 0.417216
Target:  5'- gUGGCGGCgUUGCAccgauauaauGCcAGCCUGGCCc -3'
miRNA:   3'- gACCGCCGgGAUGU----------CGuUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 12605 0.67 0.856378
Target:  5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCa -3'
miRNA:   3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 12784 0.7 0.741229
Target:  5'- cCUGgacGCGGCCCUGCaggGGCGGACgUAcggacggcggcuGCCg -3'
miRNA:   3'- -GAC---CGCCGGGAUG---UCGUUUGgAU------------CGG- -5'
28758 3' -56.1 NC_006146.1 + 13391 0.66 0.892479
Target:  5'- uCUGcGCGGCC--ACGGacuGCCUcAGCCa -3'
miRNA:   3'- -GAC-CGCCGGgaUGUCguuUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 13862 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 14126 0.78 0.29937
Target:  5'- gCUGGCGGCggCCUACAGCcagguguacGCgCUGGCCg -3'
miRNA:   3'- -GACCGCCG--GGAUGUCGuu-------UG-GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 14215 0.67 0.878692
Target:  5'- -cGGUGGCgC-GCAacGCGGGCCUucuGGCCg -3'
miRNA:   3'- gaCCGCCGgGaUGU--CGUUUGGA---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 14363 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 14540 0.71 0.681476
Target:  5'- cCUGGaccgGGCCCUGgAGCu-GCUgGGCCg -3'
miRNA:   3'- -GACCg---CCGGGAUgUCGuuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 14553 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 14711 0.69 0.760483
Target:  5'- cCUGGCGGUCC--CGGUGAAUUcggAGCCg -3'
miRNA:   3'- -GACCGCCGGGauGUCGUUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 15337 0.7 0.721594
Target:  5'- cCUGGCGggcGCCCcGC-GCGAGCCcGGCUc -3'
miRNA:   3'- -GACCGC---CGGGaUGuCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 15428 0.72 0.610027
Target:  5'- -gGGCuGGCCCggcUGCAGUccuGCCUGGCg -3'
miRNA:   3'- gaCCG-CCGGG---AUGUCGuu-UGGAUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.