Results 21 - 40 of 349 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28758 | 3' | -56.1 | NC_006146.1 | + | 15684 | 0.67 | 0.856378 |
Target: 5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCa -3' miRNA: 3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 16654 | 0.66 | 0.917295 |
Target: 5'- cCUGa-GGCCCacCAGCG-GCCUGGCUa -3' miRNA: 3'- -GACcgCCGGGauGUCGUuUGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 16940 | 0.72 | 0.599824 |
Target: 5'- -cGGCGGCCCggugugcCAGCGucccCCcAGCCg -3' miRNA: 3'- gaCCGCCGGGau-----GUCGUuu--GGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 17441 | 0.69 | 0.750908 |
Target: 5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3' miRNA: 3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 17631 | 0.71 | 0.671323 |
Target: 5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3' miRNA: 3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 17698 | 0.74 | 0.509856 |
Target: 5'- -gGGCGGCCCgugGCGGCcAAgcGCCUGGg- -3' miRNA: 3'- gaCCGCCGGGa--UGUCG-UU--UGGAUCgg -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 18386 | 0.7 | 0.691589 |
Target: 5'- cCUGGUGGCCggGguGguGAuCCUAGUCa -3' miRNA: 3'- -GACCGCCGGgaUguCguUU-GGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 18762 | 0.67 | 0.856378 |
Target: 5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCa -3' miRNA: 3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 18968 | 0.7 | 0.721594 |
Target: 5'- --aGCGGCCCcuagagaggGCGGCAgGGCCggAGCCa -3' miRNA: 3'- gacCGCCGGGa--------UGUCGU-UUGGa-UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 19604 | 0.66 | 0.917295 |
Target: 5'- cCUGGCccUCCUACA-CGGcCCUGGCCu -3' miRNA: 3'- -GACCGccGGGAUGUcGUUuGGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 19911 | 0.66 | 0.911443 |
Target: 5'- cCUGGacagGGCCCggcacaucUACGGCAucAAUCcGGCCu -3' miRNA: 3'- -GACCg---CCGGG--------AUGUCGU--UUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 20017 | 0.71 | 0.671323 |
Target: 5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3' miRNA: 3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 20119 | 0.66 | 0.892479 |
Target: 5'- -cGGUGGCCC---GGCAccuGCUgggGGCCa -3' miRNA: 3'- gaCCGCCGGGaugUCGUu--UGGa--UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 20519 | 0.69 | 0.750908 |
Target: 5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3' miRNA: 3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 20709 | 0.71 | 0.671323 |
Target: 5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3' miRNA: 3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 20726 | 0.66 | 0.905355 |
Target: 5'- gCUGGCGGCCU----GCGAGgacCCgcGCCa -3' miRNA: 3'- -GACCGCCGGGauguCGUUU---GGauCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 20910 | 0.71 | 0.681476 |
Target: 5'- gUGGaGGCCCUGagucCGGCcGACCUgcaGGCCc -3' miRNA: 3'- gACCgCCGGGAU----GUCGuUUGGA---UCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 21840 | 0.67 | 0.856378 |
Target: 5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCa -3' miRNA: 3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 22373 | 0.67 | 0.856378 |
Target: 5'- aUGGCaguGGCCa-GCAGCAugcucuccacCCUGGCCc -3' miRNA: 3'- gACCG---CCGGgaUGUCGUuu--------GGAUCGG- -5' |
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28758 | 3' | -56.1 | NC_006146.1 | + | 23095 | 0.71 | 0.671323 |
Target: 5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3' miRNA: 3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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