miRNA display CGI


Results 21 - 40 of 349 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 15684 0.67 0.856378
Target:  5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCa -3'
miRNA:   3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 16654 0.66 0.917295
Target:  5'- cCUGa-GGCCCacCAGCG-GCCUGGCUa -3'
miRNA:   3'- -GACcgCCGGGauGUCGUuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 16940 0.72 0.599824
Target:  5'- -cGGCGGCCCggugugcCAGCGucccCCcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuu--GGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 17441 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 17631 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 17698 0.74 0.509856
Target:  5'- -gGGCGGCCCgugGCGGCcAAgcGCCUGGg- -3'
miRNA:   3'- gaCCGCCGGGa--UGUCG-UU--UGGAUCgg -5'
28758 3' -56.1 NC_006146.1 + 18386 0.7 0.691589
Target:  5'- cCUGGUGGCCggGguGguGAuCCUAGUCa -3'
miRNA:   3'- -GACCGCCGGgaUguCguUU-GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 18762 0.67 0.856378
Target:  5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCa -3'
miRNA:   3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 18968 0.7 0.721594
Target:  5'- --aGCGGCCCcuagagaggGCGGCAgGGCCggAGCCa -3'
miRNA:   3'- gacCGCCGGGa--------UGUCGU-UUGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 19604 0.66 0.917295
Target:  5'- cCUGGCccUCCUACA-CGGcCCUGGCCu -3'
miRNA:   3'- -GACCGccGGGAUGUcGUUuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 19911 0.66 0.911443
Target:  5'- cCUGGacagGGCCCggcacaucUACGGCAucAAUCcGGCCu -3'
miRNA:   3'- -GACCg---CCGGG--------AUGUCGU--UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 20017 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 20119 0.66 0.892479
Target:  5'- -cGGUGGCCC---GGCAccuGCUgggGGCCa -3'
miRNA:   3'- gaCCGCCGGGaugUCGUu--UGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 20519 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 20709 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 20726 0.66 0.905355
Target:  5'- gCUGGCGGCCU----GCGAGgacCCgcGCCa -3'
miRNA:   3'- -GACCGCCGGGauguCGUUU---GGauCGG- -5'
28758 3' -56.1 NC_006146.1 + 20910 0.71 0.681476
Target:  5'- gUGGaGGCCCUGagucCGGCcGACCUgcaGGCCc -3'
miRNA:   3'- gACCgCCGGGAU----GUCGuUUGGA---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 21840 0.67 0.856378
Target:  5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCa -3'
miRNA:   3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 22373 0.67 0.856378
Target:  5'- aUGGCaguGGCCa-GCAGCAugcucuccacCCUGGCCc -3'
miRNA:   3'- gACCG---CCGGgaUGUCGUuu--------GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 23095 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.