miRNA display CGI


Results 41 - 60 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 23324 0.67 0.864026
Target:  5'- cCUGaGCgcgaguauGGCCCUGCAGaCcGACCUcAGCg -3'
miRNA:   3'- -GAC-CG--------CCGGGAUGUC-GuUUGGA-UCGg -5'
28758 3' -56.1 NC_006146.1 + 23448 0.66 0.892479
Target:  5'- -cGGCuGCCCgucuCGGCcuacgAGGCCcUGGCCg -3'
miRNA:   3'- gaCCGcCGGGau--GUCG-----UUUGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 23597 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 23779 0.66 0.898388
Target:  5'- aUGGCGGCCugcgcguCUGgGGCccGCUgAGCCc -3'
miRNA:   3'- gACCGCCGG-------GAUgUCGuuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 23787 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 23834 0.71 0.671323
Target:  5'- cCUGGCcuuuCCCUAC-GCcgGGACCUGGCCc -3'
miRNA:   3'- -GACCGcc--GGGAUGuCG--UUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 24918 0.66 0.917295
Target:  5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCc -3'
miRNA:   3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 26173 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 26675 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 26865 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 27995 0.67 0.856378
Target:  5'- -cGGCccucgaGGCCUcACAGCccAGGCCaGGCCa -3'
miRNA:   3'- gaCCG------CCGGGaUGUCG--UUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 29251 0.71 0.671323
Target:  5'- -cGGCGGCCCggugugcCAGCGucCCccgcAGCCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUuuGGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 31263 0.66 0.899033
Target:  5'- -aGGUGuuaGCCCcACAGaaguGACUUGGCCa -3'
miRNA:   3'- gaCCGC---CGGGaUGUCgu--UUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 31474 0.67 0.883619
Target:  5'- gUGGgGGCCUUcuccuacuaaACAGCAGgcaccucccccggcGCCgugggGGCCu -3'
miRNA:   3'- gACCgCCGGGA----------UGUCGUU--------------UGGa----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 33082 0.76 0.383129
Target:  5'- uUGGCucGGCCCUGCGGCucuggggcAGCCgggUGGCCg -3'
miRNA:   3'- gACCG--CCGGGAUGUCGu-------UUGG---AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33102 0.69 0.784823
Target:  5'- -cGGCGGaCCCccgaagcggaucCGGCGGACCaGGCCc -3'
miRNA:   3'- gaCCGCC-GGGau----------GUCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33160 0.69 0.769944
Target:  5'- -gGGUGGCCCgGCugGGCAccGCCgcGCCg -3'
miRNA:   3'- gaCCGCCGGGaUG--UCGUu-UGGauCGG- -5'
28758 3' -56.1 NC_006146.1 + 33236 0.66 0.899033
Target:  5'- -gGGUGGCCgc-CGGCGGGuCCgccgGGCCg -3'
miRNA:   3'- gaCCGCCGGgauGUCGUUU-GGa---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 33284 0.66 0.899033
Target:  5'- -gGGUGGCCCgGCugGGCAccGCUgcGCCg -3'
miRNA:   3'- gaCCGCCGGGaUG--UCGUu-UGGauCGG- -5'
28758 3' -56.1 NC_006146.1 + 33315 0.69 0.789402
Target:  5'- -cGGCccccGGCCCgagcuccaggaccggGCAGCGGACCcGGCa -3'
miRNA:   3'- gaCCG----CCGGGa--------------UGUCGUUUGGaUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.