miRNA display CGI


Results 41 - 60 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 54041 0.76 0.391476
Target:  5'- -gGGCGGCCauguCGGCGGuggucagggcccACCUGGCCg -3'
miRNA:   3'- gaCCGCCGGgau-GUCGUU------------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 128190 0.7 0.701652
Target:  5'- -aGGCGGCCCaggggggcgccGCGGC--GCCgGGCCa -3'
miRNA:   3'- gaCCGCCGGGa----------UGUCGuuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 46722 0.69 0.760483
Target:  5'- -cGGCGGCuCCga-GGCGGGCggaggccacgCUGGCCa -3'
miRNA:   3'- gaCCGCCG-GGaugUCGUUUG----------GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 26675 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 54910 0.7 0.701652
Target:  5'- uCUGGcCGGCCUUcagggaccgGCAGUAGGCCUcgacgucuGCCc -3'
miRNA:   3'- -GACC-GCCGGGA---------UGUCGUUUGGAu-------CGG- -5'
28758 3' -56.1 NC_006146.1 + 94917 0.72 0.610027
Target:  5'- -gGGCGaGCCCacgcagacgaUGCAGgGGACgUGGCCg -3'
miRNA:   3'- gaCCGC-CGGG----------AUGUCgUUUGgAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33082 0.76 0.383129
Target:  5'- uUGGCucGGCCCUGCGGCucuggggcAGCCgggUGGCCg -3'
miRNA:   3'- gACCG--CCGGGAUGUCGu-------UUGG---AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 68844 0.76 0.380648
Target:  5'- -gGGCucaaGGCCCUGCuGGCAAgcaggcuggcgacaGCCUGGCCc -3'
miRNA:   3'- gaCCG----CCGGGAUG-UCGUU--------------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 104342 0.71 0.671323
Target:  5'- gCUGcCGGCCCU-UGGCGGACUuUAGCCu -3'
miRNA:   3'- -GACcGCCGGGAuGUCGUUUGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 23787 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 17631 0.71 0.671323
Target:  5'- aUGGCGGCCCUGgaccCAGgAAACg-GGUCu -3'
miRNA:   3'- gACCGCCGGGAU----GUCgUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 127067 0.71 0.661138
Target:  5'- gCUGGCGGC---GCGGgAAGCCgaaagGGCCa -3'
miRNA:   3'- -GACCGCCGggaUGUCgUUUGGa----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 158244 0.74 0.500176
Target:  5'- uCUGGUaguGGCCCUugAGCcacucggggGGACuCUGGCCc -3'
miRNA:   3'- -GACCG---CCGGGAugUCG---------UUUG-GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 64252 0.7 0.741229
Target:  5'- -aGGaCGGCCCUgaccagccggccGCAGCAGGCgCUgcGGCa -3'
miRNA:   3'- gaCC-GCCGGGA------------UGUCGUUUG-GA--UCGg -5'
28758 3' -56.1 NC_006146.1 + 65471 0.7 0.731454
Target:  5'- gCUGGCgGGCUgUGCGGguGcugAgCUGGCCg -3'
miRNA:   3'- -GACCG-CCGGgAUGUCguU---UgGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 53342 0.7 0.691589
Target:  5'- -cGGCGGCCgCgggGCGGCGugagguCUUGGCUg -3'
miRNA:   3'- gaCCGCCGG-Ga--UGUCGUuu----GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 20519 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 160135 0.65 0.920692
Target:  5'- -aGGUGGCCaggggguagaAGUAGAUgUAGCCg -3'
miRNA:   3'- gaCCGCCGGgaug------UCGUUUGgAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33160 0.69 0.769944
Target:  5'- -gGGUGGCCCgGCugGGCAccGCCgcGCCg -3'
miRNA:   3'- gaCCGCCGGGaUG--UCGUu-UGGauCGG- -5'
28758 3' -56.1 NC_006146.1 + 14363 0.69 0.750908
Target:  5'- uUGGCGGgCCUGuCAGaCAGcCCUgucuagGGCCg -3'
miRNA:   3'- gACCGCCgGGAU-GUC-GUUuGGA------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.