miRNA display CGI


Results 1 - 20 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 140514 1.11 0.00213
Target:  5'- cCUGGCGGCCCUACAGCAAACCUAGCCc -3'
miRNA:   3'- -GACCGCCGGGAUGUCGUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 63423 0.78 0.292499
Target:  5'- gUGGCGGCCCU-CAGCGcGGCCaUGcGCCa -3'
miRNA:   3'- gACCGCCGGGAuGUCGU-UUGG-AU-CGG- -5'
28758 3' -56.1 NC_006146.1 + 14126 0.78 0.29937
Target:  5'- gCUGGCGGCggCCUACAGCcagguguacGCgCUGGCCg -3'
miRNA:   3'- -GACCGCCG--GGAUGUCGuu-------UG-GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 157491 0.78 0.313483
Target:  5'- -gGGCGGgCCUu--GCAGACCUGGCUg -3'
miRNA:   3'- gaCCGCCgGGAuguCGUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 116135 0.78 0.313483
Target:  5'- cCUGGCGGCCCUGC-GCu-GgCUGGUCu -3'
miRNA:   3'- -GACCGCCGGGAUGuCGuuUgGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 48094 0.77 0.343203
Target:  5'- -cGGCGGCCg-ACAGCGcGGCCUcGGCCg -3'
miRNA:   3'- gaCCGCCGGgaUGUCGU-UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 128065 0.77 0.366793
Target:  5'- cCUGGCGGCCCUcgaGGCccuGAuCCUGGUCu -3'
miRNA:   3'- -GACCGCCGGGAug-UCGu--UU-GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 68844 0.76 0.380648
Target:  5'- -gGGCucaaGGCCCUGCuGGCAAgcaggcuggcgacaGCCUGGCCc -3'
miRNA:   3'- gaCCG----CCGGGAUG-UCGUU--------------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 33082 0.76 0.383129
Target:  5'- uUGGCucGGCCCUGCGGCucuggggcAGCCgggUGGCCg -3'
miRNA:   3'- gACCG--CCGGGAUGUCGu-------UUGG---AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 54041 0.76 0.391476
Target:  5'- -gGGCGGCCauguCGGCGGuggucagggcccACCUGGCCg -3'
miRNA:   3'- gaCCGCCGGgau-GUCGUU------------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 43277 0.75 0.417216
Target:  5'- -gGGCGGCCUggaggucCGGCAGguGCCUAGCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUU--UGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 11649 0.75 0.417216
Target:  5'- gUGGCGGCgUUGCAccgauauaauGCcAGCCUGGCCc -3'
miRNA:   3'- gACCGCCGgGAUGU----------CGuUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 128517 0.75 0.417216
Target:  5'- -gGGUGGCCCUGgGGCGccCCUcGCCc -3'
miRNA:   3'- gaCCGCCGGGAUgUCGUuuGGAuCGG- -5'
28758 3' -56.1 NC_006146.1 + 71729 0.75 0.434939
Target:  5'- cCUGGUGGCUCUACgAGCuGGCCcuccGCCa -3'
miRNA:   3'- -GACCGCCGGGAUG-UCGuUUGGau--CGG- -5'
28758 3' -56.1 NC_006146.1 + 75701 0.75 0.443962
Target:  5'- cCUGGaGGagCUGCAGCGcaggGACCUGGCCa -3'
miRNA:   3'- -GACCgCCggGAUGUCGU----UUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 121889 0.75 0.462318
Target:  5'- -cGGagaacGCCCUGCGGCu--CCUAGCCg -3'
miRNA:   3'- gaCCgc---CGGGAUGUCGuuuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 53155 0.74 0.48486
Target:  5'- gUGGCGGCgaCUGCGGCGguggccggaaggcucGGCCUcGGCCc -3'
miRNA:   3'- gACCGCCGg-GAUGUCGU---------------UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 61316 0.74 0.490577
Target:  5'- -cGGC-GUCCUGCccGGguGGCCUAGCCg -3'
miRNA:   3'- gaCCGcCGGGAUG--UCguUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 158244 0.74 0.500176
Target:  5'- uCUGGUaguGGCCCUugAGCcacucggggGGACuCUGGCCc -3'
miRNA:   3'- -GACCG---CCGGGAugUCG---------UUUG-GAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 17698 0.74 0.509856
Target:  5'- -gGGCGGCCCgugGCGGCcAAgcGCCUGGg- -3'
miRNA:   3'- gaCCGCCGGGa--UGUCG-UU--UGGAUCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.