miRNA display CGI


Results 41 - 60 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 147608 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 153763 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 156841 0.66 0.911443
Target:  5'- -gGaGUGGCCagggaggACGGaGGGCCUGGCCu -3'
miRNA:   3'- gaC-CGCCGGga-----UGUCgUUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 19911 0.66 0.911443
Target:  5'- cCUGGacagGGCCCggcacaucUACGGCAucAAUCcGGCCu -3'
miRNA:   3'- -GACCg---CCGGG--------AUGUCGU--UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 137022 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 137394 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136929 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 137487 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 128545 0.66 0.911443
Target:  5'- cCUGGCGGCgcgggagauCCUggaGCGGCAGuUCgcGGCCu -3'
miRNA:   3'- -GACCGCCG---------GGA---UGUCGUUuGGa-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 136372 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 137301 0.66 0.911443
Target:  5'- gCUGccCGGUCCUGgAGCucgGGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCG---UUUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 50414 0.66 0.905355
Target:  5'- -cGGCcGCCagggACGGCAGGCa-GGCCg -3'
miRNA:   3'- gaCCGcCGGga--UGUCGUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 128828 0.66 0.905355
Target:  5'- -gGcGCGGUCCaggaGCAgGUAAGCCcGGCCa -3'
miRNA:   3'- gaC-CGCCGGGa---UGU-CGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 47609 0.66 0.905355
Target:  5'- -cGGCGGCCgc-CAGgGAucGCCgauagGGCCa -3'
miRNA:   3'- gaCCGCCGGgauGUCgUU--UGGa----UCGG- -5'
28758 3' -56.1 NC_006146.1 + 128491 0.66 0.905355
Target:  5'- -aGGgGGCCC-ACGGCGGGCaCguucAGCa -3'
miRNA:   3'- gaCCgCCGGGaUGUCGUUUG-Ga---UCGg -5'
28758 3' -56.1 NC_006146.1 + 20726 0.66 0.905355
Target:  5'- gCUGGCGGCCU----GCGAGgacCCgcGCCa -3'
miRNA:   3'- -GACCGCCGGGauguCGUUU---GGauCGG- -5'
28758 3' -56.1 NC_006146.1 + 40026 0.66 0.905355
Target:  5'- -aGGgGG-CCUGCuGgGGGCCgUAGCCg -3'
miRNA:   3'- gaCCgCCgGGAUGuCgUUUGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 66763 0.66 0.905355
Target:  5'- aCUcGCuGCUCUACGGCGucaugAAgCUGGCCg -3'
miRNA:   3'- -GAcCGcCGGGAUGUCGU-----UUgGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 167903 0.66 0.905355
Target:  5'- aUGGaaaGGCCC--CAGCAuGACCagguacUGGCCg -3'
miRNA:   3'- gACCg--CCGGGauGUCGU-UUGG------AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 53865 0.66 0.905355
Target:  5'- -aGGCgacgcuGGCCCU-CAGCGcccccguagGGCgUAGCCc -3'
miRNA:   3'- gaCCG------CCGGGAuGUCGU---------UUGgAUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.