miRNA display CGI


Results 81 - 100 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 122552 0.67 0.877979
Target:  5'- -aGGcCGGCCCgcUGGcCAGacuggacGCCUGGCCc -3'
miRNA:   3'- gaCC-GCCGGGauGUC-GUU-------UGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 57081 0.67 0.871466
Target:  5'- -cGGCGuaGUCCacgaGCGGCGcguCCUGGCCa -3'
miRNA:   3'- gaCCGC--CGGGa---UGUCGUuu-GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 40342 0.67 0.871466
Target:  5'- gUGGUGGUaggcguggggaUCUGCGGCGGAgaaggcccCCUGGUCg -3'
miRNA:   3'- gACCGCCG-----------GGAUGUCGUUU--------GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 63262 0.67 0.870732
Target:  5'- cCUGaGUGGCUggACGGCAGAugacagcCCUGGCa -3'
miRNA:   3'- -GAC-CGCCGGgaUGUCGUUU-------GGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 23324 0.67 0.864026
Target:  5'- cCUGaGCgcgaguauGGCCCUGCAGaCcGACCUcAGCg -3'
miRNA:   3'- -GAC-CG--------CCGGGAUGUC-GuUUGGA-UCGg -5'
28758 3' -56.1 NC_006146.1 + 110729 0.67 0.859462
Target:  5'- gCUGGCGGUaCUUAUAGCAcacuucuaaucccCCUGGCa -3'
miRNA:   3'- -GACCGCCG-GGAUGUCGUuu-----------GGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 165806 0.67 0.856378
Target:  5'- -cGGcCGGCUaggGgGGCGucCCUGGCCg -3'
miRNA:   3'- gaCC-GCCGGga-UgUCGUuuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 22373 0.67 0.856378
Target:  5'- aUGGCaguGGCCa-GCAGCAugcucuccacCCUGGCCc -3'
miRNA:   3'- gACCG---CCGGgaUGUCGUuu--------GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 132361 0.67 0.856378
Target:  5'- aCUGGacggGGUCCUgcgucuccACGGCcuAAACCUGGUCc -3'
miRNA:   3'- -GACCg---CCGGGA--------UGUCG--UUUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 92279 0.67 0.856378
Target:  5'- cCUGG-GGCUgCUGCuggggGGCGGGCCcGGCCu -3'
miRNA:   3'- -GACCgCCGG-GAUG-----UCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 92219 0.67 0.856378
Target:  5'- cCUGG-GGCUgCUGCuggggGGCGGGCCcGGCCu -3'
miRNA:   3'- -GACCgCCGG-GAUG-----UCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 92159 0.67 0.856378
Target:  5'- cCUGG-GGCUgCUGCuggggGGCGGGCCcGGCCu -3'
miRNA:   3'- -GACCgCCGG-GAUG-----UCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 160639 0.67 0.848526
Target:  5'- --uGUGGCaCCUGC-GCAAGCgaAGCCu -3'
miRNA:   3'- gacCGCCG-GGAUGuCGUUUGgaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 50690 0.67 0.848526
Target:  5'- -cGGCcccacaGGCaCCgacCGGCAGGCCUgaaAGCCg -3'
miRNA:   3'- gaCCG------CCG-GGau-GUCGUUUGGA---UCGG- -5'
28758 3' -56.1 NC_006146.1 + 78706 0.67 0.878692
Target:  5'- -aGGCcgGGCCCgccccccaGCAGCAGccccagGCCgGGCCc -3'
miRNA:   3'- gaCCG--CCGGGa-------UGUCGUU------UGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 4510 0.67 0.883619
Target:  5'- aCUGGCGGgCCaGCGGgGGgugaccaucucgguGCCggcAGCCg -3'
miRNA:   3'- -GACCGCCgGGaUGUCgUU--------------UGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 137580 0.67 0.885697
Target:  5'- gCUGccCGGUCCUGgAGCucgGGCCgggGGCCg -3'
miRNA:   3'- -GACc-GCCGGGAUgUCGu--UUGGa--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 55258 0.67 0.885697
Target:  5'- -gGGCGGCCCg--GGCGAAgC-GGCUc -3'
miRNA:   3'- gaCCGCCGGGaugUCGUUUgGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 154258 0.67 0.885007
Target:  5'- gCUGGUGGgCCUcagguugACGGUGAugUUGGUCc -3'
miRNA:   3'- -GACCGCCgGGA-------UGUCGUUugGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 50093 0.67 0.884314
Target:  5'- -cGGCGGCCCcGCuuguccggccacGCGGACC-GGCg -3'
miRNA:   3'- gaCCGCCGGGaUGu-----------CGUUUGGaUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.