miRNA display CGI


Results 81 - 100 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28758 3' -56.1 NC_006146.1 + 35389 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 35482 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 35575 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 35668 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 35761 0.68 0.806472
Target:  5'- --aGCGGaCCCgGCAGCG-GCCcGGCCa -3'
miRNA:   3'- gacCGCC-GGGaUGUCGUuUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 36173 0.67 0.848526
Target:  5'- cCUGGCuGGCCUggUGCAuGCAuGCCU-GCa -3'
miRNA:   3'- -GACCG-CCGGG--AUGU-CGUuUGGAuCGg -5'
28758 3' -56.1 NC_006146.1 + 39479 0.69 0.760483
Target:  5'- gUGGUGGCUC--CGGUAAuCCUAGUCa -3'
miRNA:   3'- gACCGCCGGGauGUCGUUuGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 39814 0.72 0.610027
Target:  5'- -cGGCGGCCgUugACGGCccggcGGCCUcGGCCg -3'
miRNA:   3'- gaCCGCCGGgA--UGUCGu----UUGGA-UCGG- -5'
28758 3' -56.1 NC_006146.1 + 39999 0.72 0.599824
Target:  5'- -gGGUGGCCCgGCAGCcuuuGACC-GGUCa -3'
miRNA:   3'- gaCCGCCGGGaUGUCGu---UUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 40026 0.66 0.905355
Target:  5'- -aGGgGG-CCUGCuGgGGGCCgUAGCCg -3'
miRNA:   3'- gaCCgCCgGGAUGuCgUUUGG-AUCGG- -5'
28758 3' -56.1 NC_006146.1 + 40082 0.66 0.892479
Target:  5'- -cGGCGGagggCCUGCAGCGcGugCUgcAGCUc -3'
miRNA:   3'- gaCCGCCg---GGAUGUCGU-UugGA--UCGG- -5'
28758 3' -56.1 NC_006146.1 + 40342 0.67 0.871466
Target:  5'- gUGGUGGUaggcguggggaUCUGCGGCGGAgaaggcccCCUGGUCg -3'
miRNA:   3'- gACCGCCG-----------GGAUGUCGUUU--------GGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 40441 0.72 0.630476
Target:  5'- --aGCGGCCCcguaggcgggUGCGGCAAugGCCUGGUg -3'
miRNA:   3'- gacCGCCGGG----------AUGUCGUU--UGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 40586 0.68 0.806472
Target:  5'- -aGGUccuGGCCCUggGCGGCcGAACCUccgcauGCCg -3'
miRNA:   3'- gaCCG---CCGGGA--UGUCG-UUUGGAu-----CGG- -5'
28758 3' -56.1 NC_006146.1 + 41054 0.71 0.670306
Target:  5'- -cGGCGGCCCUGgGG---GCCUcgggguggagggaGGCCa -3'
miRNA:   3'- gaCCGCCGGGAUgUCguuUGGA-------------UCGG- -5'
28758 3' -56.1 NC_006146.1 + 41616 0.7 0.691589
Target:  5'- gCUGGUccgcugGGCCCggGC-GCAGACC-AGCCc -3'
miRNA:   3'- -GACCG------CCGGGa-UGuCGUUUGGaUCGG- -5'
28758 3' -56.1 NC_006146.1 + 42050 0.67 0.878692
Target:  5'- --cGUGGCCCUuccuGU--GCCUGGCCg -3'
miRNA:   3'- gacCGCCGGGAugu-CGuuUGGAUCGG- -5'
28758 3' -56.1 NC_006146.1 + 43261 0.71 0.65093
Target:  5'- -aGcGCGGCCUggacaagagGCAGCGGGCCggcgguGCCg -3'
miRNA:   3'- gaC-CGCCGGGa--------UGUCGUUUGGau----CGG- -5'
28758 3' -56.1 NC_006146.1 + 43277 0.75 0.417216
Target:  5'- -gGGCGGCCUggaggucCGGCAGguGCCUAGCg -3'
miRNA:   3'- gaCCGCCGGGau-----GUCGUU--UGGAUCGg -5'
28758 3' -56.1 NC_006146.1 + 43483 0.69 0.757622
Target:  5'- -cGGCGGCCgUugacaccggcuccgGCGGCGgGGCCcAGCCc -3'
miRNA:   3'- gaCCGCCGGgA--------------UGUCGU-UUGGaUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.