miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 170760 0.72 0.891877
Target:  5'- aCCAcgGGCA--GCCaUCCAGGcGCCAUa -3'
miRNA:   3'- -GGUuaUCGUacUGG-AGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 132738 0.71 0.90518
Target:  5'- cCCAGUAGCcccgGuuCUCCGGGgccggaUGCCGCg -3'
miRNA:   3'- -GGUUAUCGua--CugGAGGUCC------AUGGUG- -5'
28760 3' -51 NC_006146.1 + 136860 0.71 0.923263
Target:  5'- cCCGGccGGCAUaGGCC-CCGGG-ACCACg -3'
miRNA:   3'- -GGUUa-UCGUA-CUGGaGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 127627 0.7 0.928784
Target:  5'- aCCu---GCcgGACCUCCAGG--CCGCc -3'
miRNA:   3'- -GGuuauCGuaCUGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 18348 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 27582 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 24504 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 74747 0.7 0.939066
Target:  5'- cCCAGUgAGCca-GCCUCCGGGggGCCAa -3'
miRNA:   3'- -GGUUA-UCGuacUGGAGGUCCa-UGGUg -5'
28760 3' -51 NC_006146.1 + 15270 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 104029 0.7 0.939066
Target:  5'- uCCAGcAGCAccACCUUCGGG-GCCGCa -3'
miRNA:   3'- -GGUUaUCGUacUGGAGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 21426 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 124174 0.7 0.943828
Target:  5'- ----cAGCGUGGCCUCCGcccgccucGGaGCCGCc -3'
miRNA:   3'- gguuaUCGUACUGGAGGU--------CCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 83063 0.7 0.943828
Target:  5'- -gAAUGGCgucuGUGACCUCCuGGUcgGCgGCg -3'
miRNA:   3'- ggUUAUCG----UACUGGAGGuCCA--UGgUG- -5'
28760 3' -51 NC_006146.1 + 58901 0.7 0.943828
Target:  5'- cCCAcuuuUGGCGcGACCUgCAGGgcgagGCCAUg -3'
miRNA:   3'- -GGUu---AUCGUaCUGGAgGUCCa----UGGUG- -5'
28760 3' -51 NC_006146.1 + 51062 0.7 0.948341
Target:  5'- uCCuGUAGaAUGAUCUCCAGGUccucugGCCGg -3'
miRNA:   3'- -GGuUAUCgUACUGGAGGUCCA------UGGUg -5'
28760 3' -51 NC_006146.1 + 90415 0.7 0.948341
Target:  5'- uCCAAUGGUucugacucaaGUGACUuuccaggguuUCCAGGgcacagGCCACu -3'
miRNA:   3'- -GGUUAUCG----------UACUGG----------AGGUCCa-----UGGUG- -5'
28760 3' -51 NC_006146.1 + 53380 0.7 0.951353
Target:  5'- cCCGAgggagaGGCGugagaccuauucccUGGCCUCCAGGagGCCAa -3'
miRNA:   3'- -GGUUa-----UCGU--------------ACUGGAGGUCCa-UGGUg -5'
28760 3' -51 NC_006146.1 + 107959 0.7 0.952607
Target:  5'- ----cAGCcgaGACCUCCAGGgcccuggagACCACa -3'
miRNA:   3'- gguuaUCGua-CUGGAGGUCCa--------UGGUG- -5'
28760 3' -51 NC_006146.1 + 67598 0.7 0.952607
Target:  5'- gCCcGUGGCGuuUGGCCUCC-GGUGCgAg -3'
miRNA:   3'- -GGuUAUCGU--ACUGGAGGuCCAUGgUg -5'
28760 3' -51 NC_006146.1 + 160727 0.69 0.956629
Target:  5'- gCCuGUGGCAUuacuuCCUCCAGGUAaaACu -3'
miRNA:   3'- -GGuUAUCGUAcu---GGAGGUCCAUggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.