miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 41274 0.69 0.923972
Target:  5'- aGcACGCGCCcGCGGagGACCCGGCGa -3'
miRNA:   3'- aC-UGUGUGGaCGUCcaUUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 42164 0.69 0.929365
Target:  5'- gGACACccCCUGCGGG-AAUCCAAuccagUGGa -3'
miRNA:   3'- aCUGUGu-GGACGUCCaUUGGGUU-----GCC- -5'
28760 5' -52.7 NC_006146.1 + 77296 0.69 0.929365
Target:  5'- gGACAgcaGCCc-CAGG-AGCCCGGCGGg -3'
miRNA:   3'- aCUGUg--UGGacGUCCaUUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 74666 0.69 0.929365
Target:  5'- cGuCGCuCCgggGCAGGU-ACUCGACGGu -3'
miRNA:   3'- aCuGUGuGGa--CGUCCAuUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 38919 0.69 0.929365
Target:  5'- -aACACACCUGCAGuGUu-CCCAAg-- -3'
miRNA:   3'- acUGUGUGGACGUC-CAuuGGGUUgcc -5'
28760 5' -52.7 NC_006146.1 + 138255 0.69 0.939416
Target:  5'- uUGGguUACCUGCAGGUGugUCcACaGGu -3'
miRNA:   3'- -ACUguGUGGACGUCCAUugGGuUG-CC- -5'
28760 5' -52.7 NC_006146.1 + 150891 0.69 0.939416
Target:  5'- cUGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- -ACUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 147813 0.69 0.939416
Target:  5'- cUGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- -ACUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 144735 0.69 0.939416
Target:  5'- cUGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- -ACUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 141658 0.69 0.939416
Target:  5'- cUGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- -ACUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 153969 0.69 0.939416
Target:  5'- cUGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- -ACUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 157047 0.69 0.939416
Target:  5'- cUGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- -ACUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 54794 0.68 0.942241
Target:  5'- -aGCGCGCCUuggGCAGcucguuggagagGACCCGGCGGa -3'
miRNA:   3'- acUGUGUGGA---CGUCca----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 92450 0.68 0.943622
Target:  5'- gUGGCcCGCCUggggucugaauugGCGGGUAuauguGCCCGGgGGg -3'
miRNA:   3'- -ACUGuGUGGA-------------CGUCCAU-----UGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 156555 0.68 0.944077
Target:  5'- cGACccCACCaGCAGG--GCCgCAACGGc -3'
miRNA:   3'- aCUGu-GUGGaCGUCCauUGG-GUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 111503 0.68 0.944077
Target:  5'- aGACAUccaGCCUGCA-GUGGCCCAu--- -3'
miRNA:   3'- aCUGUG---UGGACGUcCAUUGGGUugcc -5'
28760 5' -52.7 NC_006146.1 + 129130 0.68 0.944077
Target:  5'- gGGCGC-CCgggcGCAGGgccUCCGGCGGg -3'
miRNA:   3'- aCUGUGuGGa---CGUCCauuGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 58173 0.68 0.945874
Target:  5'- cGAC-CACCUGCcuguacacgggccucAGGgacGCCCugcuGCGGg -3'
miRNA:   3'- aCUGuGUGGACG---------------UCCau-UGGGu---UGCC- -5'
28760 5' -52.7 NC_006146.1 + 154684 0.68 0.947196
Target:  5'- gGGCGCugCUGCuggguGGUcugcgcccagaugcAGCCCAccaggGCGGc -3'
miRNA:   3'- aCUGUGugGACGu----CCA--------------UUGGGU-----UGCC- -5'
28760 5' -52.7 NC_006146.1 + 452 0.68 0.948497
Target:  5'- gGACACGCCccCGGGUccCCCGGCa- -3'
miRNA:   3'- aCUGUGUGGacGUCCAuuGGGUUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.