Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28762 | 3' | -43.6 | NC_006146.1 | + | 116301 | 0.66 | 0.999999 |
Target: 5'- cGGAuggcgCCCCCGCGguccucuccccaaGAGGAg- -3' miRNA: 3'- aCCUuuaa-GGGGGCGU-------------UUUCUau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 13449 | 0.66 | 0.999999 |
Target: 5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3' miRNA: 3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 16527 | 0.66 | 0.999999 |
Target: 5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3' miRNA: 3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 19605 | 0.66 | 0.999999 |
Target: 5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3' miRNA: 3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 22683 | 0.66 | 0.999999 |
Target: 5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3' miRNA: 3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 25761 | 0.66 | 0.999999 |
Target: 5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3' miRNA: 3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 39628 | 0.66 | 0.999999 |
Target: 5'- ------aUUCCUCGCAGAAGAUGg -3' miRNA: 3'- accuuuaAGGGGGCGUUUUCUAU- -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 28839 | 0.66 | 0.999999 |
Target: 5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3' miRNA: 3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 60491 | 0.66 | 0.999998 |
Target: 5'- cGGggGgccagcUCCCCCGaCGgcGAGGGUGc -3' miRNA: 3'- aCCuuUa-----AGGGGGC-GU--UUUCUAU- -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 48252 | 0.66 | 0.999998 |
Target: 5'- cGGAGgg-CCCCCGCcgccguccuggcgcGAAAGAg- -3' miRNA: 3'- aCCUUuaaGGGGGCG--------------UUUUCUau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 62555 | 0.66 | 0.999998 |
Target: 5'- uUGGAAcucgCCCCCG-AGGAGAg- -3' miRNA: 3'- -ACCUUuaa-GGGGGCgUUUUCUau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 117203 | 0.66 | 0.999998 |
Target: 5'- gGGAAcgUgCCCCCGCu--AGGc- -3' miRNA: 3'- aCCUUuaA-GGGGGCGuuuUCUau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 167370 | 0.66 | 0.999998 |
Target: 5'- gGGAAAUUCCa-CGCuGAAGAa- -3' miRNA: 3'- aCCUUUAAGGggGCGuUUUCUau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 155765 | 0.66 | 0.999997 |
Target: 5'- aGGAGcuguagacCCCgCCGCAGAAGAg- -3' miRNA: 3'- aCCUUuaa-----GGG-GGCGUUUUCUau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 128967 | 0.66 | 0.999997 |
Target: 5'- uUGGGAAgaacgCCCCCGagauuGAAGAg- -3' miRNA: 3'- -ACCUUUaa---GGGGGCgu---UUUCUau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 122768 | 0.66 | 0.999997 |
Target: 5'- uUGGGGAUcuggcggggcUCCCCgGCGAcAGAg- -3' miRNA: 3'- -ACCUUUA----------AGGGGgCGUUuUCUau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 41271 | 0.66 | 0.999997 |
Target: 5'- cGGAGcacgCgCCCGCGGAGGAc- -3' miRNA: 3'- aCCUUuaa-GgGGGCGUUUUCUau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 55004 | 0.66 | 0.999997 |
Target: 5'- cGGAAGc-CCCCCGgGcgGGAUGg -3' miRNA: 3'- aCCUUUaaGGGGGCgUuuUCUAU- -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 159715 | 0.66 | 0.999996 |
Target: 5'- aUGGAAuggccaccagGUUcCCCCCGUAGAGGc-- -3' miRNA: 3'- -ACCUU----------UAA-GGGGGCGUUUUCuau -5' |
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28762 | 3' | -43.6 | NC_006146.1 | + | 54814 | 0.67 | 0.999994 |
Target: 5'- uUGGAGAggaCCCgGCGGAGGGc- -3' miRNA: 3'- -ACCUUUaagGGGgCGUUUUCUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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