miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28762 3' -43.6 NC_006146.1 + 167370 0.66 0.999998
Target:  5'- gGGAAAUUCCa-CGCuGAAGAa- -3'
miRNA:   3'- aCCUUUAAGGggGCGuUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 166670 0.69 0.999916
Target:  5'- cGGAGAaUUCCCCGCGugccGAGGc- -3'
miRNA:   3'- aCCUUUaAGGGGGCGUu---UUCUau -5'
28762 3' -43.6 NC_006146.1 + 159715 0.66 0.999996
Target:  5'- aUGGAAuggccaccagGUUcCCCCCGUAGAGGc-- -3'
miRNA:   3'- -ACCUU----------UAA-GGGGGCGUUUUCuau -5'
28762 3' -43.6 NC_006146.1 + 157325 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 155765 0.66 0.999997
Target:  5'- aGGAGcuguagacCCCgCCGCAGAAGAg- -3'
miRNA:   3'- aCCUUuaa-----GGG-GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 154247 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 151169 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 148091 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 145099 0.67 0.999994
Target:  5'- aGGGAugggUCCCCgGCGu-AGAUGa -3'
miRNA:   3'- aCCUUua--AGGGGgCGUuuUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 145013 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 141935 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 134908 0.69 0.999887
Target:  5'- aUGGAcacguagaaccaGAgugUCCCCCGCAgagaggcugGAGGGUGa -3'
miRNA:   3'- -ACCU------------UUa--AGGGGGCGU---------UUUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 134231 1.04 0.067331
Target:  5'- uUGGAAAUUCCCCCGCAAAAGAUAa -3'
miRNA:   3'- -ACCUUUAAGGGGGCGUUUUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 130497 0.69 0.999911
Target:  5'- gUGGcuacuuugCCCCCGCGGGAGGc- -3'
miRNA:   3'- -ACCuuuaa---GGGGGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 128967 0.66 0.999997
Target:  5'- uUGGGAAgaacgCCCCCGagauuGAAGAg- -3'
miRNA:   3'- -ACCUUUaa---GGGGGCgu---UUUCUau -5'
28762 3' -43.6 NC_006146.1 + 128736 0.67 0.999983
Target:  5'- cUGGAuugaUUCCCGCAGGGGGUGu -3'
miRNA:   3'- -ACCUuuaaGGGGGCGUUUUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 122768 0.66 0.999997
Target:  5'- uUGGGGAUcuggcggggcUCCCCgGCGAcAGAg- -3'
miRNA:   3'- -ACCUUUA----------AGGGGgCGUUuUCUau -5'
28762 3' -43.6 NC_006146.1 + 117203 0.66 0.999998
Target:  5'- gGGAAcgUgCCCCCGCu--AGGc- -3'
miRNA:   3'- aCCUUuaA-GGGGGCGuuuUCUau -5'
28762 3' -43.6 NC_006146.1 + 116301 0.66 0.999999
Target:  5'- cGGAuggcgCCCCCGCGguccucuccccaaGAGGAg- -3'
miRNA:   3'- aCCUuuaa-GGGGGCGU-------------UUUCUau -5'
28762 3' -43.6 NC_006146.1 + 99542 0.67 0.999983
Target:  5'- cUGGAAGUccgagCCCCCGgGgcAGAGAUc -3'
miRNA:   3'- -ACCUUUAa----GGGGGCgU--UUUCUAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.