miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 3' -52 NC_006146.1 + 41303 0.66 0.984729
Target:  5'- --cGGUGA-GGGGcAGGGGCUuuuucagagggAGCUg- -3'
miRNA:   3'- guuCUACUaCCCC-UCCCCGA-----------UUGAaa -5'
28763 3' -52 NC_006146.1 + 164062 0.66 0.984729
Target:  5'- gGGGGUGAa-GGGAGGGGCa------ -3'
miRNA:   3'- gUUCUACUacCCCUCCCCGauugaaa -5'
28763 3' -52 NC_006146.1 + 48225 0.66 0.982794
Target:  5'- --cGAUGAgaaGGAGGGGCUgcaGACUa- -3'
miRNA:   3'- guuCUACUaccCCUCCCCGA---UUGAaa -5'
28763 3' -52 NC_006146.1 + 51465 0.66 0.982794
Target:  5'- aGAGGUguggaGAUGGGcGGGGGCUGcgGCg-- -3'
miRNA:   3'- gUUCUA-----CUACCCcUCCCCGAU--UGaaa -5'
28763 3' -52 NC_006146.1 + 42553 0.66 0.980679
Target:  5'- -cGGggGGUGGGGGGGcGCUGAa--- -3'
miRNA:   3'- guUCuaCUACCCCUCCcCGAUUgaaa -5'
28763 3' -52 NC_006146.1 + 134596 0.66 0.978377
Target:  5'- --uGAUuGUGGGGGGaGGGCUcuCUUa -3'
miRNA:   3'- guuCUAcUACCCCUC-CCCGAuuGAAa -5'
28763 3' -52 NC_006146.1 + 156309 0.66 0.976901
Target:  5'- aGAGGUGAUGuagaggcgcggguccGGGAuGGGGCUcACg-- -3'
miRNA:   3'- gUUCUACUAC---------------CCCU-CCCCGAuUGaaa -5'
28763 3' -52 NC_006146.1 + 135970 0.66 0.975877
Target:  5'- cCGGGGUGcUGGGGuGGGGGaugGGCUc- -3'
miRNA:   3'- -GUUCUACuACCCC-UCCCCga-UUGAaa -5'
28763 3' -52 NC_006146.1 + 61824 0.66 0.975877
Target:  5'- aGGGGcgcUGGUGGGGGcaguGGGGCUggUg-- -3'
miRNA:   3'- gUUCU---ACUACCCCU----CCCCGAuuGaaa -5'
28763 3' -52 NC_006146.1 + 32140 0.66 0.975877
Target:  5'- cCGGGGUGcUGGGGuGGGGGaugGGCUc- -3'
miRNA:   3'- -GUUCUACuACCCC-UCCCCga-UUGAaa -5'
28763 3' -52 NC_006146.1 + 70955 0.66 0.975877
Target:  5'- -cAGAUGAUGcGGAGGaGGCgggAGCg-- -3'
miRNA:   3'- guUCUACUACcCCUCC-CCGa--UUGaaa -5'
28763 3' -52 NC_006146.1 + 44010 0.66 0.975877
Target:  5'- gGAGGUGGaugUGGGGAGGGuCUuuuGGCUc- -3'
miRNA:   3'- gUUCUACU---ACCCCUCCCcGA---UUGAaa -5'
28763 3' -52 NC_006146.1 + 52690 0.66 0.975353
Target:  5'- cCGAGAUGGUcgcugccguguccGGGGAgaaugugcucaagGGGGUUAGCa-- -3'
miRNA:   3'- -GUUCUACUA-------------CCCCU-------------CCCCGAUUGaaa -5'
28763 3' -52 NC_006146.1 + 72015 0.67 0.973172
Target:  5'- -cGGGUGAguagcgGGGGAGuGGGUggUGACUc- -3'
miRNA:   3'- guUCUACUa-----CCCCUC-CCCG--AUUGAaa -5'
28763 3' -52 NC_006146.1 + 51682 0.67 0.970254
Target:  5'- gGGGgcGAcGGGGcGGGGGCUGAUc-- -3'
miRNA:   3'- gUUCuaCUaCCCC-UCCCCGAUUGaaa -5'
28763 3' -52 NC_006146.1 + 33228 0.67 0.967116
Target:  5'- cCGGGAUGGggcUGGGGuuccGGGGGUgggGGCUc- -3'
miRNA:   3'- -GUUCUACU---ACCCC----UCCCCGa--UUGAaa -5'
28763 3' -52 NC_006146.1 + 145048 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 148126 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 151204 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 154282 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.