miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 3' -52 NC_006146.1 + 157360 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 151204 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 39528 0.68 0.956314
Target:  5'- --uGAUGGgcugGGGGAGGcGGCgcaagGGCUg- -3'
miRNA:   3'- guuCUACUa---CCCCUCC-CCGa----UUGAaa -5'
28763 3' -52 NC_006146.1 + 132860 0.68 0.952232
Target:  5'- aCAGGAgaGGUGGGGGuGGGGgUAAUg-- -3'
miRNA:   3'- -GUUCUa-CUACCCCU-CCCCgAUUGaaa -5'
28763 3' -52 NC_006146.1 + 150664 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 156819 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 153741 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 141430 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 144508 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 147586 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 47727 0.68 0.947902
Target:  5'- uCGAGAU--UGGGGAggucuuggaGGGGCUGGCc-- -3'
miRNA:   3'- -GUUCUAcuACCCCU---------CCCCGAUUGaaa -5'
28763 3' -52 NC_006146.1 + 153526 0.68 0.943319
Target:  5'- -uGGAUGGagUGGGGGgcguGGGGCU-GCUUg -3'
miRNA:   3'- guUCUACU--ACCCCU----CCCCGAuUGAAa -5'
28763 3' -52 NC_006146.1 + 41128 0.68 0.938482
Target:  5'- uUAGGGUcccgGGGGAGGGGCgugcGCUg- -3'
miRNA:   3'- -GUUCUAcua-CCCCUCCCCGau--UGAaa -5'
28763 3' -52 NC_006146.1 + 51878 0.7 0.904042
Target:  5'- gGGGAUGAagaGGGGAGGGuGgaGGCUg- -3'
miRNA:   3'- gUUCUACUa--CCCCUCCC-CgaUUGAaa -5'
28763 3' -52 NC_006146.1 + 167287 0.7 0.890518
Target:  5'- gGGGAUGGccgGcGGGAGGGGCcGGCg-- -3'
miRNA:   3'- gUUCUACUa--C-CCCUCCCCGaUUGaaa -5'
28763 3' -52 NC_006146.1 + 169151 0.7 0.890518
Target:  5'- gGGGAUGGccgGcGGGAGGGGCcGGCg-- -3'
miRNA:   3'- gUUCUACUa--C-CCCUCCCCGaUUGaaa -5'
28763 3' -52 NC_006146.1 + 170083 0.7 0.890518
Target:  5'- gGGGAUGGccgGcGGGAGGGGCcGGCg-- -3'
miRNA:   3'- gUUCUACUa--C-CCCUCCCCGaUUGaaa -5'
28763 3' -52 NC_006146.1 + 77836 0.7 0.890518
Target:  5'- gGAGggGggGGcGGGGGGGUggGACUUUg -3'
miRNA:   3'- gUUCuaCuaCC-CCUCCCCGa-UUGAAA- -5'
28763 3' -52 NC_006146.1 + 168219 0.7 0.890518
Target:  5'- gGGGAUGGccgGcGGGAGGGGCcGGCg-- -3'
miRNA:   3'- gUUCUACUa--C-CCCUCCCCGaUUGaaa -5'
28763 3' -52 NC_006146.1 + 3787 0.7 0.883385
Target:  5'- gGGGggGggGGGGGGGGGCacGCg-- -3'
miRNA:   3'- gUUCuaCuaCCCCUCCCCGauUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.