miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 5' -50.3 NC_006146.1 + 111311 0.69 0.967116
Target:  5'- --cGGGggACGCCGCCCuCCAG--AUCg -3'
miRNA:   3'- guuUUCuaUGCGGCGGG-GGUUagUAG- -5'
28763 5' -50.3 NC_006146.1 + 111182 0.69 0.973172
Target:  5'- gCGAGAGAUGCGC--CCCCCGAcCAg- -3'
miRNA:   3'- -GUUUUCUAUGCGgcGGGGGUUaGUag -5'
28763 5' -50.3 NC_006146.1 + 111081 0.66 0.997311
Target:  5'- aCAAAGGGUGC-CCGgUCCCGcgaCAUCu -3'
miRNA:   3'- -GUUUUCUAUGcGGCgGGGGUua-GUAG- -5'
28763 5' -50.3 NC_006146.1 + 107144 0.66 0.996817
Target:  5'- gCAGAuAGGcUACGUCGCCCaCCAGaaacaCGUCg -3'
miRNA:   3'- -GUUU-UCU-AUGCGGCGGG-GGUUa----GUAG- -5'
28763 5' -50.3 NC_006146.1 + 104232 0.72 0.910425
Target:  5'- aGGGAGGUGCcCCGCCCCCc-UCAg- -3'
miRNA:   3'- gUUUUCUAUGcGGCGGGGGuuAGUag -5'
28763 5' -50.3 NC_006146.1 + 103758 0.66 0.996249
Target:  5'- uCAGGAGcgGCcaGCgGCUCCCGGUCuUCc -3'
miRNA:   3'- -GUUUUCuaUG--CGgCGGGGGUUAGuAG- -5'
28763 5' -50.3 NC_006146.1 + 101253 0.67 0.992992
Target:  5'- uGGAGGAggACcgcgggcccauuaGCCGCCCCCAGUa--- -3'
miRNA:   3'- gUUUUCUa-UG-------------CGGCGGGGGUUAguag -5'
28763 5' -50.3 NC_006146.1 + 98440 0.66 0.996249
Target:  5'- cCAGAAccGGUuucgGCGCCGCCCgggggCCAGUC-UCu -3'
miRNA:   3'- -GUUUU--CUA----UGCGGCGGG-----GGUUAGuAG- -5'
28763 5' -50.3 NC_006146.1 + 97676 0.66 0.994031
Target:  5'- gGAAAuGUGCGCCcuGCUCUCGAUgAUCg -3'
miRNA:   3'- gUUUUcUAUGCGG--CGGGGGUUAgUAG- -5'
28763 5' -50.3 NC_006146.1 + 86885 0.74 0.799867
Target:  5'- ---cAGGUA-GCCGCCUCCaAAUCAUCg -3'
miRNA:   3'- guuuUCUAUgCGGCGGGGG-UUAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 85210 0.68 0.984544
Target:  5'- aCGAGAGAcACGCCaGCCaaagagaaucaggCCCuuUCAUCc -3'
miRNA:   3'- -GUUUUCUaUGCGG-CGG-------------GGGuuAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 74640 0.67 0.990861
Target:  5'- cCAAGAGAaaagAUGCaCGCCCCCc-UCAa- -3'
miRNA:   3'- -GUUUUCUa---UGCG-GCGGGGGuuAGUag -5'
28763 5' -50.3 NC_006146.1 + 74633 0.67 0.988697
Target:  5'- ----uGAUGCGgCGCCCCCuGuaguaggccacguacUCGUCg -3'
miRNA:   3'- guuuuCUAUGCgGCGGGGGuU---------------AGUAG- -5'
28763 5' -50.3 NC_006146.1 + 73799 0.78 0.604725
Target:  5'- ---uAGAgACGCUGCCCCUGAUUAUCg -3'
miRNA:   3'- guuuUCUaUGCGGCGGGGGUUAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 64384 0.72 0.893303
Target:  5'- cCAGGGGAUGCGCCcaccugucugacuugGCCCCCGugcaCAUg -3'
miRNA:   3'- -GUUUUCUAUGCGG---------------CGGGGGUua--GUAg -5'
28763 5' -50.3 NC_006146.1 + 56167 0.68 0.978377
Target:  5'- gCAGAGGAUAgGCUGCguucugCCCCuggCAUCc -3'
miRNA:   3'- -GUUUUCUAUgCGGCG------GGGGuuaGUAG- -5'
28763 5' -50.3 NC_006146.1 + 40172 0.73 0.8525
Target:  5'- gGGAAGAgccCGCCGCCCUCc-UCGUCc -3'
miRNA:   3'- gUUUUCUau-GCGGCGGGGGuuAGUAG- -5'
28763 5' -50.3 NC_006146.1 + 31558 0.75 0.761377
Target:  5'- -------gGCGCCGCCCCUAA-CAUCa -3'
miRNA:   3'- guuuucuaUGCGGCGGGGGUUaGUAG- -5'
28763 5' -50.3 NC_006146.1 + 29364 0.68 0.986494
Target:  5'- uGAGGGGUgagGCGCUGCUCCCAuuugCAa- -3'
miRNA:   3'- gUUUUCUA---UGCGGCGGGGGUua--GUag -5'
28763 5' -50.3 NC_006146.1 + 28751 0.66 0.996249
Target:  5'- uCAGAGGGga-GCCGCCCUCGGg---- -3'
miRNA:   3'- -GUUUUCUaugCGGCGGGGGUUaguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.